Variant report

Variant	rs542486822
Chromosome Location	chr3:177665216-177665217
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:177662600-177666400	Weak transcription	Fetal Thymus	thymus
3	chr3:177663200-177665400	Enhancers	Fetal Lung	lung
4	chr3:177663200-177666800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:177663600-177665600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:177663800-177665400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:177663800-177666000	Enhancers	Adipose Nuclei	Adipose
8	chr3:177663800-177666000	Enhancers	Osteobl	bone
9	chr3:177663800-177666800	Weak transcription	Thymus	Thymus
10	chr3:177664000-177665400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:177664000-177666200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:177664000-177666400	Weak transcription	Dnd41	blood
13	chr3:177664200-177666000	Enhancers	Hela-S3	cervix
14	chr3:177665000-177665400	Enhancers	Liver	Liver
15	chr3:177665000-177665600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:177665200-177666000	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links