Variant report

Variant	rs542491171
Chromosome Location	chr20:22774177-22774178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22770400-22775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:22770600-22775800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22771000-22774200	Weak transcription	Aorta	Aorta
4	chr20:22771000-22774200	Weak transcription	Fetal Muscle Leg	muscle
5	chr20:22771000-22775400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr20:22771000-22776000	Weak transcription	Ovary	ovary
7	chr20:22772000-22778600	Enhancers	HMEC	breast
8	chr20:22772200-22777400	Enhancers	Placenta	Placenta
9	chr20:22772800-22775400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:22773000-22774800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr20:22773000-22774800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr20:22773000-22775000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr20:22773200-22774200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:22773200-22774200	Weak transcription	A549	lung
15	chr20:22773200-22774800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr20:22773200-22774800	Weak transcription	NHEK	skin
17	chr20:22773800-22776000	Weak transcription	Right Atrium	heart
18	chr20:22774000-22776600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:22774000-22778200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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