Variant report

Variant	rs542495413
Chromosome Location	chr20:22542901-22542902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:22542721-22543018	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:22542551-22545334	HepG2	liver:	n/a	n/a
3	GATA1	chr20:22542346-22543120	K562	blood:	n/a	n/a
4	POLR2A	chr20:22542648-22543552	HepG2	liver:	n/a	n/a
5	POLR2A	chr20:22542579-22543070	HepG2	liver:	n/a	n/a
6	EP300	chr20:22542630-22542944	K562	blood:	n/a	n/a
7	CCNT2	chr20:22542647-22542997	K562	blood:	n/a	n/a
8	POLR2A	chr20:22539124-22546431	HepG2	liver:	n/a	n/a
9	MBD4	chr20:22542374-22543496	HepG2	liver:	n/a	n/a
10	POLR2A	chr20:22539677-22547334	HepG2	liver:	n/a	n/a
11	RCOR1	chr20:22542526-22542959	K562	blood:	n/a	n/a
12	TEAD4	chr20:22542603-22542955	K562	blood:	n/a	n/a
13	FOSL2	chr20:22542321-22543599	HepG2	liver:	n/a	n/a
14	TAL1	chr20:22542635-22542967	K562	blood:	n/a	n/a
15	ATF1	chr20:22542666-22542964	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-2	chr20:22541191-22545754	ENSG00000225074
2	lnc-FOXA2-2	chr20:22541191-22543929	XLOC_013684
3	lnc-FOXA2-2	chr20:22541194-22545754	XLOC_013684
4	lnc-FOXA2-2	chr20:22540989-22545754	NONHSAT078989
5	lnc-FOXA2-2	chr20:22542193-22543929	NONHSAT078993
6	lnc-FOXA2-2	chr20:22541216-22545754	NONHSAT078994
7	lnc-FOXA2-2	chr20:22541192-22545754	NR_001558

No data

Variant related genes	Relation type
LINC00261	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv10848	chr20:22542235-22543685	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22536200-22544800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr20:22536800-22545200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr20:22537600-22543800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr20:22539400-22545200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22540000-22548800	Weak transcription	Gastric	stomach
7	chr20:22541200-22545000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr20:22541400-22544200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr20:22541400-22545200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:22542400-22543000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:22542400-22543200	Enhancers	K562	blood
12	chr20:22542400-22544200	Enhancers	HepG2	liver
13	chr20:22542600-22543000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:22542800-22543000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr20:22542800-22543000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr20:22542800-22543800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
17	chr20:22542800-22544400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr20:22542800-22544600	Enhancers	Liver	Liver
19	chr20:22542800-22544800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
20	chr20:22542800-22545000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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