The 2.0 version of rSNPBase

Variant report

Variant rs542511132
Chromosome Location chr3:159492597-159492598
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159483600-159493000 Weak transcription Gastric stomach
2 chr3:159483800-159493200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr3:159484000-159494600 Weak transcription Psoas Muscle Psoas
4 chr3:159484200-159493200 Weak transcription Lung lung
5 chr3:159484200-159501200 Weak transcription Placenta Amnion Placenta Amnion
6 chr3:159484400-159493000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr3:159484400-159493000 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr3:159484400-159493000 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr3:159484400-159493200 Weak transcription Fetal Stomach stomach
10 chr3:159484400-159505400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr3:159484600-159500400 Weak transcription Fetal Intestine Small intestine
12 chr3:159484800-159493000 Weak transcription HSMMtube muscle
13 chr3:159485000-159492600 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr3:159485000-159492800 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr3:159485000-159493000 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr3:159485600-159493000 Weak transcription Muscle Satellite Cultured Cells --
17 chr3:159485600-159493000 Weak transcription HMEC breast
18 chr3:159485600-159493400 Weak transcription Fetal Brain Female brain
19 chr3:159485800-159493000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr3:159486600-159493200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr3:159486800-159493000 Weak transcription Right Ventricle heart
22 chr3:159486800-159493000 Weak transcription NH-A brain
23 chr3:159486800-159493000 Weak transcription NHEK skin
24 chr3:159486800-159494000 Weak transcription Fetal Heart heart
25 chr3:159487600-159493000 Weak transcription Right Atrium heart
26 chr3:159488400-159494600 Weak transcription Spleen Spleen
27 chr3:159488600-159492600 Weak transcription Brain Anterior Caudate brain
28 chr3:159488600-159492800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr3:159488600-159493200 Weak transcription Pancreas Pancrea
30 chr3:159488600-159493200 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr3:159488800-159492600 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr3:159488800-159492800 Weak transcription Stomach Mucosa stomach
33 chr3:159488800-159493000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr3:159489000-159492800 Weak transcription NHDF-Ad bronchial
35 chr3:159489200-159492600 Weak transcription Stomach Smooth Muscle stomach
36 chr3:159489400-159492600 Weak transcription Osteobl bone
37 chr3:159489400-159493000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr3:159490200-159492600 Weak transcription A549 lung
39 chr3:159490200-159493000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr3:159490200-159493000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr3:159490200-159493000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr3:159490200-159493000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr3:159490200-159493000 Weak transcription Left Ventricle heart
44 chr3:159490200-159501400 Weak transcription Aorta Aorta
45 chr3:159490600-159492800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr3:159491000-159493200 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr3:159491000-159495200 Enhancers Brain Cingulate Gyrus brain
48 chr3:159491000-159495200 Enhancers Colon Smooth Muscle Colon
49 chr3:159491000-159495200 Enhancers Rectal Smooth Muscle rectum
50 chr3:159491000-159495200 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015