Variant report

Variant	rs542527150
Chromosome Location	chr8:59581959-59581960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3436252	chr8:59581925-59615994	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59572600-59584000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:59573800-59582000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr8:59573800-59582200	Weak transcription	GM12878-XiMat	blood
4	chr8:59574000-59584000	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:59579200-59582000	Weak transcription	NHEK	skin
6	chr8:59579600-59586000	Enhancers	K562	blood
7	chr8:59580000-59582000	Weak transcription	Lung	lung
8	chr8:59580400-59583400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:59580800-59582400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:59581400-59582400	Enhancers	Placenta	Placenta
11	chr8:59581400-59583200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:59581600-59582600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:59581600-59582600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:59581600-59583800	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links