Variant report

Variant	rs542534011
Chromosome Location	chr11:5761869-5761870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1041568	chr11:5585716-5765688	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv553273	chr11:5639873-5871831	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
9	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
10	nsv553277	chr11:5722948-6010075	Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
11	esv1843296	chr11:5730377-5970717	Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	esv2758255	chr11:5730377-5970717	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	esv2759801	chr11:5730377-6007613	ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv896950	chr11:5740634-5827540	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
15	nsv832058	chr11:5747594-5926814	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
16	esv1827491	chr11:5755505-5775501	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	esv3453553	chr11:5758076-5764274	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv989880	chr11:5758238-5765079	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3503323	chr11:5758876-5763474	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv1817137	chr11:5759141-5809172	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	esv3503327	chr11:5759326-5763399	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3453531	chr11:5759401-5763249	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
23	esv2640046	chr11:5759512-5763069	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
24	esv3453575	chr11:5759652-5762704	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
25	esv2347807	chr11:5759909-5762552	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3453509	chr11:5759954-5762473	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	esv3503326	chr11:5759970-5762485	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
28	esv3503324	chr11:5759974-5762463	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
29	esv3503325	chr11:5760004-5762403	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	esv3453564	chr11:5760009-5762443	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
31	esv3453542	chr11:5760010-5762439	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
32	esv3453520	chr11:5760024-5762393	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
33	esv3503328	chr11:5760031-5762417	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
34	nsv825741	chr11:5760039-5762541	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	esv2905	chr11:5760054-5762474	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv1832223	chr11:5760056-5773545	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
37	esv1805431	chr11:5760056-5809358	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
38	esv11059	chr11:5760083-5762372	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
39	nsv821206	chr11:5760083-5762541	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	nsv8783	chr11:5760084-5768911	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	esv3453586	chr11:5760088-5762366	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv3503329	chr11:5760088-5762366	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	nsv825743	chr11:5760092-5762541	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
44	nsv553285	chr11:5760106-5762156	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	esv1806684	chr11:5760106-5762286	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	esv1810172	chr11:5760106-5762286	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
47	esv1810651	chr11:5760106-5762286	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1812861	chr11:5760106-5762286	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
49	esv1835072	chr11:5760106-5762286	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
50	esv1837325	chr11:5760106-5762286	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5747400-5762400	Weak transcription	Left Ventricle	heart
2	chr11:5761800-5762000	ZNF genes & repeats	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links