Variant report

Variant	rs542539052
Chromosome Location	chr11:104942315-104942316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:104941990-104942437	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr11:104942222-104942367	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr11:104942006-104942470	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr11:104942242-104942452	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr11:104942305-104942368	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr11:104942094-104942573	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr11:104942173-104942368	MCF10A-Er-Src	breast:	n/a	chr11:104942263-104942274
8	MYC	chr11:104942084-104942475	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:104942187-104942387	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr11:104942308-104942443	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CASP1P2	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv470	chr11:104916361-104961230	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
11	nsv1042388	chr11:104934347-104988325	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
12	esv2756562	chr11:104937371-104981568	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
13	esv3450730	chr11:104938956-104968986	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	nsv1040275	chr11:104939029-104988325	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
15	nsv818863	chr11:104940204-104960997	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
16	nsv975224	chr11:104941023-104949677	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
17	nsv8871	chr11:104941750-104973508	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104940200-104942400	Active TSS	Primary T cells fromperipheralblood	blood
2	chr11:104940800-104943200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:104941000-104942600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:104941000-104942600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:104941000-104942600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:104941200-104942400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:104941200-104942400	Enhancers	Placenta	Placenta
8	chr11:104941400-104942400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr11:104941400-104942400	Flanking Active TSS	NHEK	skin
10	chr11:104941400-104942600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:104941400-104942600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr11:104941600-104942400	Enhancers	HMEC	breast
13	chr11:104942000-104942400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:104942000-104942400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:104942000-104942600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr11:104942200-104942400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:104942200-104942400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:104942200-104942400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr11:104942200-104942400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:104942200-104942400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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