Variant report

Variant	rs542547259
Chromosome Location	chr2:72465301-72465302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
2	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
3	chr2:72462600-72465800	Enhancers	HMEC	breast
4	chr2:72462800-72465400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:72462800-72465400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:72462800-72465600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:72462800-72465800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:72462800-72465800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:72462800-72466200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:72463000-72465800	Enhancers	Osteobl	bone
11	chr2:72463000-72466000	Enhancers	NHDF-Ad	bronchial
12	chr2:72464200-72466200	Enhancers	NHEK	skin
13	chr2:72464200-72468000	Weak transcription	Adipose Nuclei	Adipose
14	chr2:72464400-72468600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr2:72465000-72468200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:72465000-72468200	Weak transcription	A549	lung
17	chr2:72465200-72468400	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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