Variant report

Variant	rs542553836
Chromosome Location	chr7:108106498-108106499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108092926..108094617-chr7:108105069..108107356,2	K562	blood:
2	chr7:108094678..108098834-chr7:108103652..108107753,7	MCF-7	breast:
3	chr7:107992642..107995000-chr7:108106224..108108684,2	MCF-7	breast:
4	chr7:108101662..108103769-chr7:108105980..108107741,2	MCF-7	breast:
5	chr7:108096789..108098872-chr7:108105981..108108747,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv967438	chr7:108105134-108108283	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv2753284	chr7:108105345-108130214	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108097200-108118000	Weak transcription	Aorta	Aorta
2	chr7:108098200-108140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:108100400-108106600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:108100800-108108800	Weak transcription	HUVEC	blood vessel
5	chr7:108101000-108119200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:108101400-108116800	Weak transcription	Osteobl	bone
7	chr7:108101800-108108400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:108102200-108106800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:108102400-108129600	Weak transcription	Pancreas	Pancrea
10	chr7:108102400-108137000	Weak transcription	NH-A	brain
11	chr7:108102400-108143600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:108102600-108116000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:108102600-108118200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:108102800-108107000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:108102800-108111000	Weak transcription	HSMM	muscle
16	chr7:108102800-108111200	Weak transcription	Adipose Nuclei	Adipose
17	chr7:108102800-108126400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:108102800-108158400	Weak transcription	HSMMtube	muscle
19	chr7:108103000-108111200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:108103200-108115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:108104200-108111200	Weak transcription	Left Ventricle	heart
22	chr7:108104400-108116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr7:108104800-108117400	Weak transcription	Dnd41	blood
24	chr7:108105000-108116000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:108105600-108117800	Weak transcription	Thymus	Thymus
26	chr7:108105800-108111000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr7:108105800-108158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr7:108106000-108116800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:108106200-108108600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:108106200-108150800	Weak transcription	NHLF	lung
31	chr7:108106400-108113000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:108106400-108117200	Weak transcription	Primary T cells from cord blood	blood

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