Variant report

Variant	rs542563329
Chromosome Location	chr7:150674519-150674520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150646673..150650094-chr7:150670937..150674779,4	MCF-7	breast:
2	chr7:150671828..150674694-chr7:150692153..150695076,2	MCF-7	breast:
3	chr7:150673570..150675827-chr7:150725848..150727398,2	MCF-7	breast:
4	chr7:150064708..150066870-chr7:150673905..150675576,2	MCF-7	breast:
5	chr7:150669264..150677850-chr7:150681612..150689209,13	MCF-7	breast:
6	chr7:150654740..150658307-chr7:150674264..150676481,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164867	Chromatin interaction
ENSG00000243433	Chromatin interaction
ENSG00000214022	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000055118	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
4	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv889463	chr7:150640285-150700946	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv889466	chr7:150642341-150687430	Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
12	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
13	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv889468	chr7:150652419-150696111	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
15	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv609002	chr7:150667210-150678080	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
17	nsv889470	chr7:150667210-150696111	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
18	nsv8231	chr7:150671367-150681014	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
19	esv3339760	chr7:150673844-150676392	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
20	esv3331100	chr7:150674019-150676492	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
21	esv3403395	chr7:150674469-150676667	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150672400-150674600	Flanking Active TSS	Fetal Brain Female	brain
2	chr7:150672400-150674800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
3	chr7:150672400-150674800	Enhancers	Pancreas	Pancrea
4	chr7:150672400-150674800	Flanking Active TSS	K562	blood
5	chr7:150672600-150674800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr7:150672600-150674800	Bivalent Enhancer	Fetal Thymus	thymus
7	chr7:150672800-150674600	Bivalent Enhancer	HepG2	liver
8	chr7:150672800-150674800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr7:150672800-150675600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr7:150673000-150674600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
11	chr7:150673000-150674600	Bivalent Enhancer	Thymus	Thymus
12	chr7:150673000-150674800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr7:150673200-150674800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:150673400-150674800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:150673600-150674600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:150673600-150674800	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr7:150673600-150676600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr7:150673800-150674800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
19	chr7:150673800-150674800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
20	chr7:150673800-150675600	Weak transcription	A549	lung
21	chr7:150674000-150674600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:150674000-150674600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
24	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
26	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
27	chr7:150674000-150674600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
29	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
30	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
31	chr7:150674000-150674600	ZNF genes & repeats	Lung	lung
32	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
33	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
34	chr7:150674000-150674600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
35	chr7:150674000-150674800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:150674000-150674800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
37	chr7:150674000-150674800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:150674000-150674800	Flanking Active TSS	Fetal Brain Male	brain
39	chr7:150674000-150674800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
40	chr7:150674000-150674800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr7:150674000-150674800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr7:150674000-150675600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
43	chr7:150674200-150674600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:150674200-150674600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:150674200-150674600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:150674200-150674600	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
47	chr7:150674200-150674600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
48	chr7:150674200-150674600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:150674200-150674600	Flanking Bivalent TSS/Enh	Placenta	Placenta
50	chr7:150674200-150674600	Flanking Active TSS	Right Ventricle	heart

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