Variant report

Variant	rs542564692
Chromosome Location	chr3:139001692-139001693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591856	chr3:139000844-139037832	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138999000-139006800	Weak transcription	Pancreas	Pancrea
2	chr3:138999200-139001800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:139000000-139001800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:139000600-139003000	Flanking Active TSS	NHDF-Ad	bronchial
5	chr3:139000800-139002600	Enhancers	K562	blood
6	chr3:139000800-139004400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:139000800-139011200	Weak transcription	NHLF	lung
8	chr3:139001200-139001800	Enhancers	Brain Substantia Nigra	brain
9	chr3:139001200-139002800	Weak transcription	Ovary	ovary
10	chr3:139001200-139003200	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:139001200-139003200	Enhancers	Brain Hippocampus Middle	brain
12	chr3:139001200-139004600	Weak transcription	Right Ventricle	heart
13	chr3:139001400-139001800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:139001400-139003200	Enhancers	Brain Angular Gyrus	brain
15	chr3:139001600-139002000	Active TSS	HSMM	muscle
16	chr3:139001600-139002800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:139001600-139003600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:139001600-139005000	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links