Variant report

Variant	rs542575543
Chromosome Location	chr11:10471301-10471302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10470733..10474944-chr11:10476648..10480616,5	MCF-7	breast:
2	chr11:10471184..10472852-chr11:10561290..10564176,2	K562	blood:
3	chr11:10469398..10472547-chr11:10473380..10477623,4	K562	blood:
4	chr11:10428535..10430173-chr11:10471249..10473167,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110315	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000177112	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3370994	chr11:10471201-10473749	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10464600-10471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10465600-10472000	Weak transcription	Right Atrium	heart
4	chr11:10466600-10471400	Weak transcription	Spleen	Spleen
5	chr11:10467200-10471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:10467400-10471400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:10467400-10471600	Weak transcription	Adipose Nuclei	Adipose
8	chr11:10469800-10471400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:10471000-10471400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:10471000-10471400	Enhancers	Brain Hippocampus Middle	brain
11	chr11:10471000-10471600	Enhancers	Primary B cells from cord blood	blood
12	chr11:10471000-10471600	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:10471000-10471600	Enhancers	Primary T cells from cord blood	blood
14	chr11:10471000-10471600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:10471000-10471600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:10471000-10471600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:10471000-10471600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:10471000-10471600	Enhancers	Esophagus	oesophagus
19	chr11:10471000-10471800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:10471000-10471800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr11:10471000-10472000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:10471200-10471400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr11:10471200-10471400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:10471200-10471400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr11:10471200-10471400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:10471200-10471400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:10471200-10471600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:10471200-10471600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:10471200-10471600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr11:10471200-10471600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:10471200-10471600	Enhancers	Brain Angular Gyrus	brain
32	chr11:10471200-10471600	Enhancers	Fetal Thymus	thymus
33	chr11:10471200-10471600	Enhancers	Pancreas	Pancrea
34	chr11:10471200-10471800	Enhancers	Primary hematopoietic stem cells	blood
35	chr11:10471200-10471800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:10471200-10471800	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr11:10471200-10472000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr11:10471200-10472200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr11:10471200-10472800	Active TSS	Brain Substantia Nigra	brain

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