Variant report

Variant	rs542612692
Chromosome Location	chr6:150612631-150612632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv519529	chr6:150612012-150618750	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150604200-150617000	Weak transcription	Pancreas	Pancrea
2	chr6:150611600-150614200	Weak transcription	NHDF-Ad	bronchial
3	chr6:150611600-150615400	Weak transcription	Esophagus	oesophagus
4	chr6:150611800-150613200	Weak transcription	Placenta	Placenta
5	chr6:150611800-150614200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:150612000-150613400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:150612000-150614600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:150612200-150613400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:150612200-150613800	Weak transcription	K562	blood
10	chr6:150612200-150614000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:150612200-150614000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:150612200-150614200	Weak transcription	HMEC	breast
13	chr6:150612400-150613400	Weak transcription	NHEK	skin
14	chr6:150612400-150613600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:150612400-150613600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:150612400-150613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:150612400-150614200	Weak transcription	NH-A	brain
18	chr6:150612400-150614200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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