Variant report

Variant	rs542615423
Chromosome Location	chr14:45756903-45756904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:45756845-45757197	H1-hESC	embryonic stem cell:	n/a	chr14:45757004-45757011
2	CTCF	chr14:45756900-45757050	HMF	breast:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
3	CTCF	chr14:45756879-45757144	GM12878	blood:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
4	RAD21	chr14:45756778-45757355	MCF-7	breast:	n/a	chr14:45757004-45757011
5	RAD21	chr14:45756813-45757182	A549	lung:	n/a	chr14:45757004-45757011
6	CTCF	chr14:45756883-45757125	Medullo	brain:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
7	CTCF	chr14:45756755-45757247	HCT-116	colon:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
8	RAD21	chr14:45756892-45757097	HepG2	liver:	n/a	chr14:45757004-45757011
9	RAD21	chr14:45756763-45757179	HCT-116	colon:	n/a	chr14:45757004-45757011
10	RAD21	chr14:45756837-45757186	H1-hESC	embryonic stem cell:	n/a	chr14:45757004-45757011
11	RAD21	chr14:45756882-45757204	HepG2	liver:	n/a	chr14:45757004-45757011
12	CTCF	chr14:45756826-45757078	H1-hESC	embryonic stem cell:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
13	RAD21	chr14:45756808-45757177	ECC-1	luminal epithelium:	n/a	chr14:45757004-45757011
14	CTCF	chr14:45756880-45757030	HRE	kidney:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
15	CTCF	chr14:45756900-45757050	HBMEC	blood vessel:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
16	RAD21	chr14:45756855-45757145	GM12878	blood:	n/a	chr14:45757004-45757011
17	CTCF	chr14:45756840-45756990	A549	lung:	n/a	n/a
18	CTCF	chr14:45756891-45757226	MCF-7	breast:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
19	RAD21	chr14:45756847-45757205	H1-hESC	embryonic stem cell:	n/a	chr14:45757004-45757011
20	RAD21	chr14:45756766-45757267	MCF-7	breast:	n/a	chr14:45757004-45757011
21	CTCF	chr14:45756746-45757251	MCF-7	breast:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
22	CTCF	chr14:45756881-45757149	K562	blood:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
23	RAD21	chr14:45756868-45757199	Hela-S3	cervix:	n/a	chr14:45757004-45757011
24	RAD21	chr14:45756875-45757221	HCT-116	colon:	n/a	chr14:45757004-45757011
25	CTCF	chr14:45756900-45757050	GM06990	blood:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024
26	CTCF	chr14:45756892-45757140	A549	lung:	n/a	chr14:45757001-45757019 chr14:45757006-45757014 chr14:45757002-45757018 chr14:45757003-45757024

Variant related genes	Relation type
DNAJC19P9	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901843	chr14:45506857-45833490	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv530814	chr14:45604432-46198418	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv901844	chr14:45606287-46063731	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1044445	chr14:45606779-45807171	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv901845	chr14:45619217-45772910	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv901846	chr14:45702358-45783546	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv564726	chr14:45702358-45911581	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv2758357	chr14:45706082-45982410	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv2759987	chr14:45706082-45982410	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv527140	chr14:45748246-45783546	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1052383	chr14:45753937-45834141	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1052588	chr14:45753937-46003738	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv916721	chr14:45753973-45979614	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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