Variant report

Variant	rs542629512
Chromosome Location	chr7:25362028-25362029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028018	chr7:25351950-25371700	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv464409	chr7:25352809-25371700	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv464410	chr7:25354077-25371700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv606427	chr7:25354077-25371700	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
7	esv3477924	chr7:25360464-25362564	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3477925	chr7:25360464-25362564	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv12021	chr7:25360557-25362570	Weak transcription Enhancers	lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv606428	chr7:25360909-25362030	Enhancers Weak transcription	lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv606429	chr7:25360909-25362501	Enhancers Weak transcription	lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25358200-25362200	Enhancers	Ovary	ovary
2	chr7:25358800-25364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:25361200-25362600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:25361400-25363400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:25361600-25369400	Weak transcription	Pancreas	Pancrea
6	chr7:25362000-25362600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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