Variant report

Variant	rs542644333
Chromosome Location	chr7:22396012-22396013
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:22395826-22397740	ECC-1	luminal epithelium:	n/a	chr7:22396400-22396409 chr7:22396401-22396408 chr7:22396247-22396257
2	SIN3A	chr7:22395713-22396845	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOXA2	chr7:22395653-22396145	HepG2	liver:	n/a	n/a
4	POLR2A	chr7:22395893-22396149	MCF-7	breast:	n/a	n/a
5	POLR2A	chr7:22395920-22397909	HepG2	liver:	n/a	n/a
6	MAX	chr7:22395733-22398023	HepG2	liver:	n/a	chr7:22396400-22396409 chr7:22396401-22396408 chr7:22396247-22396257
7	MAX	chr7:22395746-22396567	GM12878	blood:	n/a	chr7:22396400-22396409 chr7:22396401-22396408 chr7:22396247-22396257
8	GATA3	chr7:22395593-22396068	T-47D	breast:	n/a	n/a
9	MAX	chr7:22395821-22397345	H1-hESC	embryonic stem cell:	n/a	chr7:22396400-22396409 chr7:22396401-22396408 chr7:22396247-22396257
10	BACH1	chr7:22395958-22396124	H1-hESC	embryonic stem cell:	n/a	n/a
11	RUNX3	chr7:22395870-22396240	GM12878	blood:	n/a	n/a
12	FOXA1	chr7:22395571-22396118	HepG2	liver:	n/a	n/a
13	BHLHE40	chr7:22395948-22397776	HepG2	liver:	n/a	chr7:22396791-22396807
14	POLR2A	chr7:22395877-22396243	GM12878	blood:	n/a	n/a
15	MAZ	chr7:22395894-22396155	GM12878	blood:	n/a	n/a
16	RCOR1	chr7:22395825-22396025	GM12878	blood:	n/a	n/a
17	POLR2A	chr7:22395656-22396092	HepG2	liver:	n/a	n/a
18	POLR2A	chr7:22395614-22397066	Raji	blood:	n/a	n/a
19	POLR2A	chr7:22395610-22396939	GM19099	blood:	n/a	n/a
20	POLR2A	chr7:22395606-22396149	HepG2	liver:	n/a	n/a
21	FOXA1	chr7:22395577-22396111	HepG2	liver:	n/a	n/a
22	POLR2A	chr7:22395814-22396184	GM12878	blood:	n/a	n/a
23	POLR2A	chr7:22395775-22396933	GM19193	blood:	n/a	n/a
24	POLR2A	chr7:22395889-22396164	MCF-7	breast:	n/a	n/a
25	RAD21	chr7:22395700-22396238	SK-N-SH_RA	brain:	n/a	n/a
26	MAX	chr7:22395944-22396092	HepG2	liver:	n/a	n/a
27	FOXA1	chr7:22395669-22396187	T-47D	breast:	n/a	n/a
28	POLR2A	chr7:22395694-22396048	HepG2	liver:	n/a	n/a
29	MYC	chr7:22396012-22396172	MCF-7	breast:	n/a	n/a
30	MXI1	chr7:22395172-22397746	SK-N-SH	brain:	n/a	n/a
31	RUNX3	chr7:22395721-22396315	GM12878	blood:	n/a	n/a
32	POLR2A	chr7:22395680-22396914	GM15510	blood:	n/a	n/a
33	POLR2A	chr7:22395773-22396924	GM18951	blood:	n/a	n/a
34	HEY1	chr7:22395542-22396210	HepG2	liver:	n/a	n/a
35	MAX	chr7:22395826-22396505	H1-hESC	embryonic stem cell:	n/a	chr7:22396400-22396409 chr7:22396401-22396408 chr7:22396247-22396257
36	RCOR1	chr7:22395890-22396142	HepG2	liver:	n/a	n/a
37	MAX	chr7:22395602-22398083	HepG2	liver:	n/a	chr7:22396400-22396409 chr7:22396401-22396408 chr7:22396247-22396257
38	MXI1	chr7:22395699-22396159	GM12878	blood:	n/a	n/a
39	CHD2	chr7:22395824-22396452	GM12878	blood:	n/a	chr7:22396237-22396247
40	POLR2A	chr7:22395738-22396927	GM18505	blood:	n/a	n/a
41	RFX5	chr7:22395983-22396044	HepG2	liver:	n/a	n/a
42	POLR2A	chr7:22395607-22396475	HepG2	liver:	n/a	n/a
43	ELF1	chr7:22395571-22396076	GM12878	blood:	n/a	n/a
44	BHLHE40	chr7:22395839-22396507	GM12878	blood:	n/a	n/a
45	ELF1	chr7:22395747-22396239	GM12878	blood:	n/a	n/a
46	POLR2A	chr7:22394994-22398094	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STEAP1B-4	chr7:22395929-22396230	NONHSAT119460

Variant related genes	Relation type
RAPGEF5	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3437848	chr7:22395252-22397800	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3375885	chr7:22395502-22397825	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3445637	chr7:22395652-22398200	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22392400-22396200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr7:22393800-22397000	Active TSS	Brain Anterior Caudate	brain
3	chr7:22394200-22397000	Active TSS	Brain Angular Gyrus	brain
4	chr7:22394400-22397600	Active TSS	Duodenum Mucosa	Duodenum
5	chr7:22394800-22397000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:22395000-22396200	Flanking Active TSS	Liver	Liver
7	chr7:22395000-22396200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr7:22395000-22397000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:22395000-22397000	Active TSS	Esophagus	oesophagus
10	chr7:22395000-22397000	Active TSS	Fetal Intestine Large	intestine
11	chr7:22395000-22397000	Active TSS	GM12878-XiMat	blood
12	chr7:22395000-22397200	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr7:22395000-22397600	Active TSS	Brain Cingulate Gyrus	brain
14	chr7:22395200-22396200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:22395200-22396200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:22395200-22396200	Bivalent Enhancer	Fetal Brain Male	brain
17	chr7:22395200-22396200	Active TSS	Fetal Kidney	kidney
18	chr7:22395200-22396200	Flanking Active TSS	HMEC	breast
19	chr7:22395200-22396200	Flanking Active TSS	NHEK	skin
20	chr7:22395200-22396400	Active TSS	Right Ventricle	heart
21	chr7:22395200-22396800	Bivalent/Poised TSS	Small Intestine	intestine
22	chr7:22395200-22397000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr7:22395200-22397000	Active TSS	Colonic Mucosa	Colon
24	chr7:22395200-22397000	Active TSS	Lung	lung
25	chr7:22395400-22396200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
26	chr7:22395400-22396200	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr7:22395400-22396400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
28	chr7:22395400-22396400	Bivalent/Poised TSS	Fetal Stomach	stomach
29	chr7:22395400-22397000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr7:22395400-22397000	Active TSS	Pancreas	Pancrea
31	chr7:22395400-22397000	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr7:22395400-22397000	Bivalent/Poised TSS	HepG2	liver
33	chr7:22395400-22397200	Active TSS	H9 Cell Line	embryonic stem cell
34	chr7:22395400-22397400	Active TSS	Thymus	Thymus
35	chr7:22395600-22396200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr7:22395600-22396200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr7:22395600-22396200	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
38	chr7:22395600-22396200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
39	chr7:22395600-22396200	Active TSS	Stomach Mucosa	stomach
40	chr7:22395600-22396400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:22395600-22397000	Active TSS	Fetal Intestine Small	intestine
42	chr7:22395600-22397000	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr7:22395600-22397000	Active TSS	Spleen	Spleen
44	chr7:22395800-22396200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr7:22395800-22396200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr7:22395800-22396200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
47	chr7:22395800-22396200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr7:22395800-22396200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:22395800-22396200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr7:22395800-22396200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links