Variant report

Variant	rs542651109
Chromosome Location	chr12:104511372-104511373
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104510515..104519727-chr12:104525085..104533754,15	MCF-7	breast:
2	chr12:104503448..104507553-chr12:104508039..104511568,3	MCF-7	breast:
3	chr12:104457763..104459399-chr12:104511021..104513721,2	K562	blood:

Variant related genes	Relation type
ENSG00000111727	Chromatin interaction
ENSG00000120837	Chromatin interaction
ENSG00000120820	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427922	chr12:104325583-104523096	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv1823607	chr12:104506318-104549541	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	n/a
3	esv1816017	chr12:104510676-104531860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104460000-104511800	Weak transcription	Hela-S3	cervix
2	chr12:104460000-104526200	Weak transcription	Colonic Mucosa	Colon
3	chr12:104492000-104512400	Weak transcription	HMEC	breast
4	chr12:104493200-104512400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr12:104493200-104514400	Weak transcription	NHEK	skin
6	chr12:104493400-104511800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:104493400-104513400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:104493400-104514400	Weak transcription	Brain Substantia Nigra	brain
9	chr12:104493400-104519200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:104493400-104519800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:104493600-104517400	Weak transcription	Right Ventricle	heart
12	chr12:104493800-104515400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr12:104493800-104518400	Weak transcription	Gastric	stomach
14	chr12:104493800-104530600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:104494400-104513600	Weak transcription	Brain Germinal Matrix	brain
16	chr12:104494400-104514000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr12:104494400-104516200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:104494400-104516200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:104494400-104521000	Weak transcription	Lung	lung
20	chr12:104494400-104521200	Weak transcription	Aorta	Aorta
21	chr12:104494400-104522600	Weak transcription	Spleen	Spleen
22	chr12:104494600-104516000	Weak transcription	Fetal Stomach	stomach
23	chr12:104495600-104514200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr12:104495600-104530800	Weak transcription	Esophagus	oesophagus
25	chr12:104497000-104514200	Weak transcription	NHLF	lung
26	chr12:104497000-104516000	Weak transcription	Ovary	ovary
27	chr12:104497000-104516200	Weak transcription	Left Ventricle	heart
28	chr12:104497000-104524600	Weak transcription	Pancreas	Pancrea
29	chr12:104497200-104511400	Weak transcription	NH-A	brain
30	chr12:104497400-104513400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr12:104501200-104512400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr12:104501200-104514800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:104501200-104519000	Weak transcription	K562	blood
34	chr12:104501400-104516000	Weak transcription	Fetal Muscle Leg	muscle
35	chr12:104501600-104514400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr12:104502800-104526200	Weak transcription	Psoas Muscle	Psoas
37	chr12:104503000-104512000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr12:104503000-104516000	Weak transcription	Thymus	Thymus
39	chr12:104503200-104513600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr12:104503200-104514800	Weak transcription	Brain Anterior Caudate	brain
41	chr12:104503200-104519800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:104503400-104513400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr12:104503400-104514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr12:104503600-104514200	Weak transcription	Fetal Heart	heart
45	chr12:104503600-104514600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr12:104504000-104514000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:104504800-104512400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr12:104504800-104512400	Weak transcription	Fetal Lung	lung
49	chr12:104504800-104514200	Weak transcription	HSMMtube	muscle
50	chr12:104505400-104512000	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links