Variant report

Variant	rs542652608
Chromosome Location	chr6:15675739-15675740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15672759..15682190-chr6:16128127..16132961,11	K562	blood:
2	chr6:15674092..15676465-chr6:16128146..16130347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3340839	chr6:15675685-15675971	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15672800-15677200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15673200-15677400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:15673800-15676400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:15674000-15677000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:15674400-15676600	Enhancers	Psoas Muscle	Psoas
6	chr6:15674600-15676400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:15674600-15676600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:15674800-15675800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:15674800-15676200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:15674800-15676600	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:15674800-15676600	Enhancers	Brain Anterior Caudate	brain
12	chr6:15674800-15676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:15675000-15675800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:15675000-15675800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:15675000-15675800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:15675000-15675800	Enhancers	K562	blood
17	chr6:15675000-15676000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:15675000-15676000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:15675000-15676200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:15675000-15676200	Enhancers	Brain Substantia Nigra	brain
21	chr6:15675000-15676400	Bivalent Enhancer	HepG2	liver
22	chr6:15675000-15676400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:15675000-15676600	Enhancers	Fetal Intestine Small	intestine
24	chr6:15675000-15676600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr6:15675200-15676000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:15675200-15676000	Enhancers	Right Atrium	heart
27	chr6:15675200-15676600	Enhancers	Brain Hippocampus Middle	brain
28	chr6:15675200-15676600	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:15675200-15676600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr6:15675200-15676600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:15675200-15676600	Enhancers	Spleen	Spleen
32	chr6:15675400-15675800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:15675400-15675800	Enhancers	Small Intestine	intestine
34	chr6:15675400-15676000	Enhancers	Fetal Stomach	stomach
35	chr6:15675400-15676400	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:15675400-15676400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:15675400-15676600	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:15675400-15676600	Enhancers	Fetal Intestine Large	intestine
39	chr6:15675600-15676400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:15675600-15676400	Enhancers	Colonic Mucosa	Colon
41	chr6:15675600-15676600	Enhancers	Adipose Nuclei	Adipose
42	chr6:15675600-15676600	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:15675600-15676800	Enhancers	Brain Angular Gyrus	brain

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