Variant report

Variant	rs542653649
Chromosome Location	chr3:141571923-141571924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv591894	chr3:141570294-141572848	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv6972	chr3:141571890-141573010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141560600-141572600	Weak transcription	Spleen	Spleen
2	chr3:141565000-141572000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:141565000-141578000	Weak transcription	Fetal Intestine Small	intestine
4	chr3:141567600-141574600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:141568600-141572400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:141568600-141572400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:141568600-141579600	Weak transcription	Fetal Thymus	thymus
8	chr3:141569000-141572000	Weak transcription	K562	blood
9	chr3:141569800-141572600	Enhancers	HUVEC	blood vessel
10	chr3:141570800-141572400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:141570800-141578600	Weak transcription	Left Ventricle	heart
12	chr3:141571000-141572000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:141571800-141572000	Enhancers	Lung	lung
14	chr3:141571800-141572800	Enhancers	Esophagus	oesophagus
15	chr3:141571800-141573000	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:141571800-141573000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr3:141571800-141573600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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