Variant report

Variant	rs542668407
Chromosome Location	chr11:32861056-32861057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32854588..32857057-chr11:32860540..32862429,2	K562	blood:
2	chr11:32858756..32863139-chr11:32912593..32915314,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv897193	chr11:32838288-32903263	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	esv3368120	chr11:32860476-32862424	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32852000-32862000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:32852200-32876800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:32852800-32863800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:32852800-32871000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:32852800-32878800	Weak transcription	Placenta	Placenta
6	chr11:32853000-32863000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:32853000-32877200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:32854000-32871200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:32855000-32876800	Weak transcription	Esophagus	oesophagus
10	chr11:32858600-32873800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:32860000-32861200	Enhancers	A549	lung
12	chr11:32860600-32862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:32860800-32861800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:32860800-32861800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:32860800-32861800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:32860800-32864600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:32861000-32861200	Enhancers	NHEK	skin
18	chr11:32861000-32861600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:32861000-32861800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:32861000-32861800	Weak transcription	Hela-S3	cervix
21	chr11:32861000-32862600	Strong transcription	Liver	Liver
22	chr11:32861000-32865400	Weak transcription	HMEC	breast
23	chr11:32861000-32865600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:32861000-32869200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:32861000-32872200	Weak transcription	Gastric	stomach

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