Variant report

Variant	rs542668939
Chromosome Location	chr3:119437791-119437792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv591391	chr3:119403145-119442572	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119422200-119458200	Weak transcription	Aorta	Aorta
2	chr3:119422800-119440000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:119423000-119463000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:119423000-119464400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:119423200-119464200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:119423200-119471600	Weak transcription	Fetal Kidney	kidney
7	chr3:119423400-119458200	Weak transcription	Brain Substantia Nigra	brain
8	chr3:119423800-119449000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:119428800-119469200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:119431200-119470400	Weak transcription	Gastric	stomach
11	chr3:119434200-119438200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:119434800-119438000	Weak transcription	Fetal Stomach	stomach
13	chr3:119435000-119438800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:119435400-119478200	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:119436600-119444000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:119436800-119444600	Weak transcription	Ovary	ovary
17	chr3:119436800-119450200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:119436800-119450600	Weak transcription	Brain Anterior Caudate	brain
19	chr3:119436800-119462800	Weak transcription	Pancreas	Pancrea
20	chr3:119437200-119442400	Weak transcription	Stomach Mucosa	stomach

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