Variant report

Variant	rs542684286
Chromosome Location	chr5:79276202-79276203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763465	chr5:79274595-79278596	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79260600-79286200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:79269000-79286400	Weak transcription	Thymus	Thymus
3	chr5:79269400-79277800	Weak transcription	Hela-S3	cervix
4	chr5:79269400-79279200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:79269600-79276600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:79269600-79277800	Weak transcription	Brain Anterior Caudate	brain
7	chr5:79269800-79279200	Weak transcription	Brain Substantia Nigra	brain
8	chr5:79269800-79279400	Weak transcription	Lung	lung
9	chr5:79269800-79281400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:79269800-79286000	Weak transcription	Fetal Heart	heart
11	chr5:79270000-79276400	Strong transcription	Primary B cells from cord blood	blood
12	chr5:79270000-79276400	Weak transcription	Fetal Kidney	kidney
13	chr5:79270000-79286000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:79270200-79286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:79270400-79276400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:79270600-79278400	Weak transcription	HepG2	liver
17	chr5:79270800-79284800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:79271000-79286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:79271200-79279400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:79271200-79280400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:79271200-79281000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:79271200-79282000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:79271200-79285200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:79271200-79285800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:79271200-79285800	Weak transcription	NHLF	lung
26	chr5:79271400-79277800	Weak transcription	NH-A	brain
27	chr5:79271400-79284000	Weak transcription	HSMMtube	muscle
28	chr5:79271400-79285400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:79271400-79286000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr5:79271400-79286000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:79271600-79277800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:79271600-79280800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr5:79271600-79286000	Weak transcription	HUVEC	blood vessel
34	chr5:79271800-79277800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr5:79272200-79279400	Weak transcription	Spleen	Spleen
36	chr5:79272200-79286400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:79272400-79277000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:79272400-79279400	Weak transcription	Right Ventricle	heart
39	chr5:79272400-79285000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:79272400-79286400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr5:79272400-79286400	Weak transcription	Pancreas	Pancrea
42	chr5:79272600-79284800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:79272600-79285000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:79272600-79285000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:79272600-79285200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:79272600-79286000	Weak transcription	Small Intestine	intestine
47	chr5:79272600-79286400	Weak transcription	Gastric	stomach
48	chr5:79272800-79279400	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:79272800-79285000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:79272800-79285400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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