Variant report

Variant	rs542710071
Chromosome Location	chr15:79104864-79104865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79102834..79106085-chr15:79164025..79165931,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3354433	chr15:79102422-79105270	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3334366	chr15:79102897-79105495	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79103800-79105200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:79103800-79105400	Enhancers	Spleen	Spleen
3	chr15:79104200-79105000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:79104200-79105000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
5	chr15:79104200-79106000	Weak transcription	Fetal Kidney	kidney
6	chr15:79104400-79105000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:79104400-79105000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:79104400-79105000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr15:79104400-79105000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:79104400-79105000	Enhancers	Fetal Heart	heart
11	chr15:79104400-79105200	Enhancers	Left Ventricle	heart
12	chr15:79104400-79105200	Enhancers	Lung	lung
13	chr15:79104600-79105000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:79104600-79105000	Enhancers	Primary hematopoietic stem cells	blood
15	chr15:79104600-79105000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:79104600-79105000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:79104600-79105000	Enhancers	Brain Germinal Matrix	brain
18	chr15:79104600-79105000	Bivalent Enhancer	Colonic Mucosa	Colon
19	chr15:79104600-79105000	Enhancers	Colon Smooth Muscle	Colon
20	chr15:79104600-79105000	Enhancers	Fetal Brain Female	brain
21	chr15:79104600-79105000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr15:79104600-79105000	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr15:79104600-79105000	Enhancers	Right Atrium	heart
24	chr15:79104600-79105200	Enhancers	Brain Anterior Caudate	brain
25	chr15:79104600-79105200	Enhancers	Brain Hippocampus Middle	brain
26	chr15:79104600-79105200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:79104600-79105200	Enhancers	Right Ventricle	heart
28	chr15:79104600-79105400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr15:79104800-79105000	Enhancers	Adipose Nuclei	Adipose
30	chr15:79104800-79105000	Enhancers	Ovary	ovary
31	chr15:79104800-79105000	Enhancers	GM12878-XiMat	blood
32	chr15:79104800-79105000	Enhancers	HSMMtube	muscle
33	chr15:79104800-79105200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
34	chr15:79104800-79105400	Enhancers	Brain Cingulate Gyrus	brain
35	chr15:79104800-79105400	Enhancers	Gastric	stomach
36	chr15:79104800-79106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:79104800-79106800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:79104800-79117800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr15:79104800-79117800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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