Variant report

Variant	rs542731848
Chromosome Location	chr3:98287495-98287496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98282871..98285029-chr3:98286675..98289199,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528056	chr3:98101101-98317836	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv520503	chr3:98102801-98317836	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv834775	chr3:98170059-98367552	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv997484	chr3:98284283-98371420	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1000357	chr3:98284283-98381473	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv536661	chr3:98286588-98315764	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98273600-98292600	Weak transcription	K562	blood
2	chr3:98280600-98288000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:98280800-98288200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:98280800-98288200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr3:98281200-98296200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:98281400-98295800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:98282600-98288200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:98283000-98292200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:98283000-98295200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:98283400-98288200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:98283600-98295800	Weak transcription	Primary B cells from cord blood	blood
12	chr3:98283800-98298400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr3:98284600-98292200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:98284600-98292200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:98284600-98295800	Weak transcription	Thymus	Thymus
16	chr3:98285000-98295800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:98285000-98296200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:98285000-98296200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:98285000-98296200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:98285000-98303400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:98285200-98295200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:98285200-98295800	Weak transcription	Fetal Thymus	thymus
23	chr3:98285800-98295200	Weak transcription	Primary T cells from cord blood	blood
24	chr3:98285800-98295200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:98285800-98295600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr3:98285800-98295800	Weak transcription	Dnd41	blood
27	chr3:98286800-98304200	Weak transcription	Pancreas	Pancrea
28	chr3:98287000-98288000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr3:98287000-98295400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:98287000-98296000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr3:98287000-98296000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:98287000-98296000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:98287200-98288000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:98287200-98291400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:98287200-98310200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr3:98287400-98287600	Enhancers	GM12878-XiMat	blood
37	chr3:98287400-98310400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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