Variant report

Variant	rs542740884
Chromosome Location	chr16:48573172-48573173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48570296..48572124-chr16:48572247..48574636,2	MCF-7	breast:
2	chr16:48572635..48573281-chr16:48656885..48657503,2	MCF-7	breast:
3	chr16:48559845..48562587-chr16:48571698..48574105,2	K562	blood:
4	chr16:48572005..48574156-chr16:48576994..48578777,2	K562	blood:

Variant related genes	Relation type
ENSG00000260086	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv428658	chr16:48438656-48587750	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1060196	chr16:48531171-48578101	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv33450	chr16:48572307-48575919	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48561000-48574400	Weak transcription	Fetal Intestine Large	intestine
2	chr16:48561000-48575200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr16:48566400-48583000	Weak transcription	Fetal Brain Male	brain
4	chr16:48569000-48573200	Enhancers	Brain Cingulate Gyrus	brain
5	chr16:48569200-48574000	Enhancers	Brain Substantia Nigra	brain
6	chr16:48569400-48573600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr16:48569400-48578000	Strong transcription	Fetal Brain Female	brain
8	chr16:48569600-48573600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr16:48569600-48573600	Enhancers	Fetal Heart	heart
10	chr16:48569800-48573200	Enhancers	Liver	Liver
11	chr16:48569800-48573200	Enhancers	Stomach Mucosa	stomach
12	chr16:48569800-48580600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr16:48570000-48575200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr16:48570400-48575000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr16:48570400-48575000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr16:48570400-48576600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr16:48570400-48578800	Strong transcription	Brain Germinal Matrix	brain
18	chr16:48570600-48574800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr16:48570800-48573200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:48570800-48573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr16:48571000-48573800	Genic enhancers	Spleen	Spleen
22	chr16:48571000-48575000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr16:48571000-48575800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr16:48571000-48580600	Weak transcription	NHDF-Ad	bronchial
25	chr16:48571200-48574800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr16:48571200-48575000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr16:48571200-48575000	Strong transcription	Fetal Intestine Small	intestine
28	chr16:48571200-48576200	Weak transcription	Fetal Kidney	kidney
29	chr16:48571200-48576800	Weak transcription	Small Intestine	intestine
30	chr16:48571200-48586000	Weak transcription	NH-A	brain
31	chr16:48571200-48586800	Weak transcription	HUVEC	blood vessel
32	chr16:48571400-48576800	Weak transcription	Primary B cells from cord blood	blood
33	chr16:48571400-48576800	Weak transcription	Aorta	Aorta
34	chr16:48571600-48573400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr16:48571600-48573600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr16:48571600-48574400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr16:48571600-48574400	Weak transcription	NHLF	lung
38	chr16:48571600-48574600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr16:48571600-48574600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr16:48571600-48574600	Weak transcription	Osteobl	bone
41	chr16:48571600-48574800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr16:48571600-48574800	Weak transcription	Dnd41	blood
43	chr16:48571600-48575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr16:48571600-48576800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr16:48571600-48578200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr16:48571600-48586800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr16:48571800-48573200	Enhancers	Brain Hippocampus Middle	brain
48	chr16:48571800-48573400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:48571800-48573600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr16:48571800-48573800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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