Variant report

Variant	rs542753062
Chromosome Location	chr4:101023877-101023878
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101021600-101024000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:101022600-101027600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:101022600-101027800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr4:101022600-101027800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:101022600-101027800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:101022600-101027800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:101022600-101027800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:101022600-101028000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:101022600-101028000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:101022600-101028000	Weak transcription	Fetal Thymus	thymus
12	chr4:101022600-101030200	Weak transcription	Fetal Intestine Large	intestine
13	chr4:101022800-101027800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:101022800-101028000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:101022800-101028000	Weak transcription	GM12878-XiMat	blood
16	chr4:101023000-101027600	Weak transcription	Dnd41	blood
17	chr4:101023000-101027800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:101023400-101027400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:101023800-101024000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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