Variant report

Variant	rs542770458
Chromosome Location	chr19:21911992-21911993
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911422	chr19:21752009-21973929	ZNF genes & repeats Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3441368	chr19:21781459-22182822	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv3339694	chr19:21781479-22182792	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1063115	chr19:21782104-22528039	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv458525	chr19:21796943-22019697	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv578969	chr19:21796943-22019697	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv3392559	chr19:21798396-21965956	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv911424	chr19:21798441-22471156	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv833783	chr19:21821406-21991838	ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv1815274	chr19:21825750-21981855	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv911425	chr19:21841379-22338142	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv911426	chr19:21892040-21973929	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv911427	chr19:21900898-21960407	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv833784	chr19:21902647-22037153	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv578970	chr19:21906655-21973929	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv961193	chr19:21911308-21950500	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21905600-21947200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:21906200-21919400	ZNF genes & repeats	Dnd41	blood
3	chr19:21906200-21927600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:21906200-21949200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:21907000-21915800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:21907800-21914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:21908000-21920400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:21908200-21912000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr19:21908200-21920400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:21908600-21916600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr19:21908800-21912400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:21908800-21914000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr19:21908800-21916400	Weak transcription	Pancreas	Pancrea
14	chr19:21908800-21948800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr19:21909000-21912000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr19:21909000-21912000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr19:21909000-21912000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr19:21909000-21912400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:21909000-21913600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr19:21909200-21912000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:21909200-21912000	ZNF genes & repeats	Adipose Nuclei	Adipose
22	chr19:21909200-21912000	ZNF genes & repeats	Fetal Lung	lung
23	chr19:21909200-21912200	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr19:21909200-21912600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr19:21909200-21913600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
26	chr19:21909200-21913800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
27	chr19:21909200-21919600	ZNF genes & repeats	Liver	Liver
28	chr19:21909200-21946000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:21909400-21912000	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr19:21909400-21912000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
31	chr19:21909400-21912200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr19:21909600-21912200	ZNF genes & repeats	GM12878-XiMat	blood
33	chr19:21909800-21914000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr19:21909800-21915800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr19:21910000-21912000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:21910000-21916600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:21910400-21916400	Weak transcription	Gastric	stomach
38	chr19:21910400-21916800	Weak transcription	Fetal Thymus	thymus
39	chr19:21910600-21914200	Weak transcription	Ovary	ovary
40	chr19:21910800-21913000	Weak transcription	Fetal Kidney	kidney
41	chr19:21910800-21913600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr19:21910800-21920800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr19:21910800-21922000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr19:21911000-21914200	Weak transcription	Placenta	Placenta
45	chr19:21911000-21916400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr19:21911000-21917000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr19:21911200-21913200	Weak transcription	Brain Hippocampus Middle	brain
48	chr19:21911200-21916200	Weak transcription	NH-A	brain
49	chr19:21911200-21916800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr19:21911200-21917000	Weak transcription	Colon Smooth Muscle	Colon

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