Variant report

Variant	rs542771926
Chromosome Location	chr17:16975509-16975510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16973848..16977843-chr17:17007115..17009088,3	K562	blood:
2	chr17:16961416..16963930-chr17:16973048..16975828,2	MCF-7	breast:
3	chr17:16944012..16948651-chr17:16974298..16979165,8	MCF-7	breast:
4	chr17:16975220..16977056-chr17:16977821..16980020,2	K562	blood:
5	chr17:16960541..16963488-chr17:16973669..16975731,3	MCF-7	breast:
6	chr17:16973117..16976449-chr17:16977265..16979682,3	MCF-7	breast:
7	chr17:16975491..16978124-chr17:16978720..16981255,2	K562	blood:

Variant related genes	Relation type
ENSG00000225442	Chromatin interaction
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
2	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr17:16960800-16976400	Weak transcription	Aorta	Aorta
8	chr17:16961600-16977200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr17:16966200-16980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr17:16966800-16975600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:16968000-16976600	Weak transcription	NHDF-Ad	bronchial
12	chr17:16968000-16977000	Weak transcription	Colon Smooth Muscle	Colon
13	chr17:16970000-16981000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr17:16970800-16976800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:16970800-16977000	Weak transcription	HSMMtube	muscle
16	chr17:16970800-16980400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:16971000-16976200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr17:16971000-16976400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:16971000-16976800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr17:16971000-16977200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:16971000-16979000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr17:16973000-16981000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:16973000-16981200	Enhancers	Brain Anterior Caudate	brain
24	chr17:16973200-16985000	Genic enhancers	A549	lung
25	chr17:16973400-16981400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr17:16973600-16976200	Enhancers	Small Intestine	intestine
27	chr17:16973600-16979800	Genic enhancers	HSMM	muscle
28	chr17:16973600-16980000	Genic enhancers	HMEC	breast
29	chr17:16973600-16997600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr17:16973800-16976800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr17:16973800-16977200	Weak transcription	HUVEC	blood vessel
32	chr17:16973800-16978200	Enhancers	Stomach Mucosa	stomach
33	chr17:16973800-16978200	Weak transcription	GM12878-XiMat	blood
34	chr17:16973800-16982200	Strong transcription	Fetal Brain Female	brain
35	chr17:16974000-16975800	Weak transcription	Primary B cells from cord blood	blood
36	chr17:16974000-16976000	Enhancers	Duodenum Mucosa	Duodenum
37	chr17:16974000-16976200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr17:16974000-16976200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr17:16974000-16977200	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr17:16974000-16977200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr17:16974000-16977200	Strong transcription	Fetal Lung	lung
42	chr17:16974000-16995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr17:16974200-16975600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr17:16974200-16975600	Strong transcription	Stomach Smooth Muscle	stomach
45	chr17:16974200-16975800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr17:16974200-16975800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr17:16974200-16976400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr17:16974200-16976400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr17:16974200-16976400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr17:16974200-16976400	Enhancers	Brain Substantia Nigra	brain

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