Variant report

Variant	rs542776521
Chromosome Location	chr1:58714673-58714674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv546307	chr1:58707111-58733050	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv546308	chr1:58714427-58743499	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58713000-58716800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
2	chr1:58713600-58715200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
3	chr1:58713800-58715000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:58713800-58715200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:58713800-58715600	Enhancers	Rectal Smooth Muscle	rectum
6	chr1:58713800-58715800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:58713800-58716000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
8	chr1:58714000-58714800	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
9	chr1:58714000-58715000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr1:58714000-58715200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:58714000-58715200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
12	chr1:58714200-58714800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr1:58714200-58714800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr1:58714200-58714800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
15	chr1:58714200-58714800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:58714200-58714800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:58714200-58715000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:58714200-58715000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:58714200-58715200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
20	chr1:58714200-58715400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
21	chr1:58714200-58715800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
22	chr1:58714200-58716200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr1:58714200-58716200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:58714200-58716200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
26	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
30	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
31	chr1:58714400-58714800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
32	chr1:58714400-58715000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
33	chr1:58714400-58715200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:58714400-58715200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:58714400-58715200	Bivalent Enhancer	Fetal Stomach	stomach
36	chr1:58714400-58715400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
37	chr1:58714400-58715600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:58714400-58715600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
39	chr1:58714400-58716200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
40	chr1:58714400-58716400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr1:58714600-58714800	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:58714600-58714800	Flanking Bivalent TSS/Enh	Liver	Liver
43	chr1:58714600-58714800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
44	chr1:58714600-58714800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
45	chr1:58714600-58714800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
46	chr1:58714600-58714800	Flanking Active TSS	Right Ventricle	heart
47	chr1:58714600-58714800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
48	chr1:58714600-58715000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr1:58714600-58715000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
50	chr1:58714600-58715000	Active TSS	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links