Variant report

Variant	rs542793003
Chromosome Location	chr9:8338553-8338554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2830193	chr9:8337939-8345923	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8323400-8341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:8323800-8341600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:8324000-8345000	Weak transcription	Fetal Brain Male	brain
4	chr9:8328200-8338600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:8329800-8339800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:8330000-8338600	Weak transcription	Brain Substantia Nigra	brain
7	chr9:8330000-8348600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:8330200-8338600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:8330200-8339800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:8330200-8339800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:8330200-8340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:8330200-8340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:8330200-8340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:8330200-8342200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
16	chr9:8330400-8340000	Weak transcription	Placenta	Placenta
17	chr9:8331400-8342000	Weak transcription	Fetal Kidney	kidney
18	chr9:8336800-8341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:8337200-8340400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:8337400-8339000	Enhancers	Fetal Intestine Large	intestine
21	chr9:8337400-8339000	Enhancers	Fetal Intestine Small	intestine
22	chr9:8337400-8339000	Enhancers	Pancreas	Pancrea
23	chr9:8337400-8339600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:8337400-8339600	Strong transcription	Brain Germinal Matrix	brain
25	chr9:8337400-8340200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:8337400-8340200	Strong transcription	Brain Cingulate Gyrus	brain
27	chr9:8337400-8340600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:8337400-8340800	Strong transcription	Fetal Brain Female	brain
29	chr9:8337400-8341800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:8337600-8338800	Enhancers	Fetal Lung	lung
31	chr9:8337600-8340000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:8337600-8340400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr9:8337800-8339000	Enhancers	Adipose Nuclei	Adipose
34	chr9:8337800-8339000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr9:8337800-8339400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:8337800-8339600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:8337800-8339600	Enhancers	Ovary	ovary
38	chr9:8338000-8338600	Strong transcription	Dnd41	blood
39	chr9:8338000-8339000	Enhancers	Aorta	Aorta
40	chr9:8338000-8339200	Enhancers	Liver	Liver
41	chr9:8338000-8339600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr9:8338200-8338600	Enhancers	Spleen	Spleen
43	chr9:8338200-8338800	Strong transcription	Brain Angular Gyrus	brain
44	chr9:8338200-8338800	Enhancers	Stomach Mucosa	stomach
45	chr9:8338200-8339000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr9:8338200-8339000	Genic enhancers	Fetal Muscle Leg	muscle
47	chr9:8338200-8339000	Enhancers	Fetal Stomach	stomach
48	chr9:8338200-8339600	Enhancers	HUVEC	blood vessel
49	chr9:8338200-8339800	Strong transcription	Brain Hippocampus Middle	brain
50	chr9:8338400-8338800	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links