Variant report

Variant	rs542796166
Chromosome Location	chr6:26576351-26576352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26215403..26219104-chr6:26575436..26578957,4	K562	blood:
2	chr6:26575145..26580691-chr6:26582301..26587887,10	K562	blood:
3	chr6:26216001..26219242-chr6:26574102..26578957,5	K562	blood:
4	chr6:26311713..26314020-chr6:26575069..26576687,2	K562	blood:
5	chr6:26195366..26197728-chr6:26574483..26577323,2	K562	blood:
6	chr6:26574454..26577093-chr6:27063520..27065530,2	K562	blood:
7	chr6:26327970..26330676-chr6:26575820..26578738,2	K562	blood:
8	chr6:26575403..26577801-chr6:26599976..26601665,3	K562	blood:
9	chr6:26575952..26578920-chr6:26582301..26585861,4	K562	blood:
10	chr6:26029513..26031973-chr6:26575071..26576731,2	K562	blood:
11	chr6:26566413..26579648-chr6:26592370..26599609,38	K562	blood:
12	chr6:26520128..26522932-chr6:26576156..26579285,4	K562	blood:
13	chr6:26341150..26343678-chr6:26575652..26577197,2	K562	blood:
14	chr6:26575954..26578514-chr6:27111915..27114661,2	K562	blood:
15	chr6:26576158..26578683-chr6:27099793..27101418,3	K562	blood:
16	chr6:26541729..26543411-chr6:26576160..26577936,2	K562	blood:
17	chr6:26568033..26580216-chr6:26588796..26603066,49	K562	blood:
18	chr6:26402744..26404382-chr6:26575217..26577628,2	K562	blood:
19	chr6:26536620..26538867-chr6:26576288..26578360,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000216331	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000187990	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
4	esv3475110	chr6:26575704-26577436	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv3475111	chr6:26575704-26577436	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26569600-26577600	Weak transcription	Spleen	Spleen
2	chr6:26573000-26576600	Weak transcription	NHLF	lung
3	chr6:26573000-26576800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:26573000-26576800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:26573000-26577000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:26573000-26577200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:26573000-26577600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:26573200-26576600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:26573200-26576800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:26573200-26577000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:26573200-26577000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:26573200-26577400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:26573400-26576400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:26573400-26576400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:26573400-26576400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:26573400-26576600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:26573400-26576600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:26573400-26576800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:26573400-26576800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:26573400-26576800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:26573400-26576800	Weak transcription	Brain Anterior Caudate	brain
22	chr6:26573400-26577000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:26573400-26577000	Weak transcription	HMEC	breast
24	chr6:26573400-26577200	Weak transcription	Dnd41	blood
25	chr6:26573400-26577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:26573400-26577400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:26573400-26577400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:26573600-26576400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:26573600-26576800	Weak transcription	Osteobl	bone
30	chr6:26574200-26576800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:26575600-26578600	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:26575800-26576400	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr6:26575800-26576600	Enhancers	Hela-S3	cervix
34	chr6:26575800-26577000	Flanking Active TSS	K562	blood
35	chr6:26575800-26577400	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr6:26575800-26578200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:26575800-26578400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr6:26575800-26578400	Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:26575800-26578400	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr6:26575800-26578600	Active TSS	H1 Cell Line	embryonic stem cell
41	chr6:26575800-26578600	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr6:26576000-26576600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:26576000-26577200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:26576000-26577200	Flanking Active TSS	HepG2	liver
45	chr6:26576000-26578200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:26576000-26578200	Active TSS	A549	lung
47	chr6:26576200-26576400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:26576200-26576600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr6:26576200-26576600	Enhancers	NHEK	skin
50	chr6:26576200-26576800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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