Variant report

Variant	rs542808924
Chromosome Location	chr15:76221102-76221103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr15:76221065-76221325	GM12878	blood:	n/a	n/a
2	CTCF	chr15:76221100-76221250	HPAF	blood vessel:	n/a	chr15:76221174-76221187
3	RAD21	chr15:76220906-76221458	HCT-116	colon:	n/a	n/a
4	CTCF	chr15:76220955-76221363	K562	blood:	n/a	chr15:76221174-76221187
5	CTCF	chr15:76221100-76221250	WERI-Rb-1	eye:	n/a	chr15:76221174-76221187
6	RUNX3	chr15:76221050-76221331	GM12878	blood:	n/a	n/a
7	CTCF	chr15:76221080-76221230	GM12867	blood:	n/a	chr15:76221174-76221187
8	CTCF	chr15:76220993-76221383	GM12878	blood:	n/a	chr15:76221174-76221187
9	CTCF	chr15:76221040-76221190	Hela-S3	cervix:	n/a	chr15:76221174-76221187
10	CTCF	chr15:76221033-76221346	MCF-7	breast:	n/a	chr15:76221174-76221187
11	CTCF	chr15:76220821-76222347	A549	lung:	n/a	chr15:76221174-76221187
12	CTCF	chr15:76221100-76221250	HEK293	kidney:	n/a	chr15:76221174-76221187
13	CTCF	chr15:76221100-76221250	HRPEpiC	eye:	n/a	chr15:76221174-76221187
14	CTCF	chr15:76221080-76221230	GM12878	blood:	n/a	chr15:76221174-76221187
15	ZNF384	chr15:76221061-76221331	K562	blood:	n/a	n/a
16	CTCF	chr15:76221100-76221250	GM12866	blood:	n/a	chr15:76221174-76221187
17	CTCF	chr15:76221100-76221250	AG09309	skin:	n/a	chr15:76221174-76221187
18	CTCF	chr15:76220964-76221304	H1-hESC	embryonic stem cell:	n/a	chr15:76221174-76221187
19	RAD21	chr15:76221028-76221335	HepG2	liver:	n/a	n/a
20	CTCF	chr15:76221080-76221230	AoAF	blood vessel:	n/a	chr15:76221174-76221187
21	CTCF	chr15:76221080-76221230	HCT-116	colon:	n/a	chr15:76221174-76221187
22	CTCF	chr15:76221063-76221286	GM19239	blood:	n/a	chr15:76221174-76221187
23	CTCF	chr15:76220956-76221328	K562	blood:	n/a	chr15:76221174-76221187
24	RAD21	chr15:76220942-76221376	HepG2	liver:	n/a	n/a
25	CTCF	chr15:76221100-76221250	BJ	skin:	n/a	chr15:76221174-76221187
26	CTCF	chr15:76221080-76221230	AG04450	lung:	n/a	chr15:76221174-76221187
27	CTCF	chr15:76221100-76221250	HCT-116	colon:	n/a	chr15:76221174-76221187
28	CTCF	chr15:76221102-76221234	GM19240	blood:	n/a	chr15:76221174-76221187
29	CTCF	chr15:76221023-76221318	A549	lung:	n/a	chr15:76221174-76221187
30	GTF2F1	chr15:76221071-76221342	H1-hESC	embryonic stem cell:	n/a	n/a
31	FOXA1	chr15:76221011-76221323	T-47D	breast:	n/a	n/a
32	SMC3	chr15:76221038-76221302	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr15:76221100-76221250	GM12873	blood:	n/a	chr15:76221174-76221187
34	CTCF	chr15:76221073-76221298	HepG2	liver:	n/a	chr15:76221174-76221187
35	CTCF	chr15:76221064-76221265	MCF-7	breast:	n/a	chr15:76221174-76221187
36	CTCF	chr15:76221060-76221210	AG09309	skin:	n/a	chr15:76221174-76221187
37	CTCF	chr15:76220950-76221269	A549	lung:	n/a	chr15:76221174-76221187
38	CTCF	chr15:76221040-76221190	HFF-Myc	foreskin:	n/a	chr15:76221174-76221187
39	CTCF	chr15:76220970-76221378	MCF-7	breast:	n/a	chr15:76221174-76221187
40	CTCF	chr15:76221069-76221291	SK-N-SH_RA	brain:	n/a	chr15:76221174-76221187
41	CTCF	chr15:76221100-76221250	GM12867	blood:	n/a	chr15:76221174-76221187
42	CTCF	chr15:76221100-76221250	HVMF	connective:	n/a	chr15:76221174-76221187
43	ZNF143	chr15:76221008-76221366	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr15:76221041-76221291	T-47D	breast:	n/a	chr15:76221174-76221187
45	ZNF143	chr15:76221017-76221367	K562	blood:	n/a	n/a
46	CTCF	chr15:76221086-76221309	Medullo	brain:	n/a	chr15:76221174-76221187
47	CTCF	chr15:76221080-76221230	NHDF-neo	bronchial:	n/a	chr15:76221174-76221187
48	CTCF	chr15:76221100-76221250	Hela-S3	cervix:	n/a	chr15:76221174-76221187
49	CTCF	chr15:76221080-76221230	HepG2	liver:	n/a	chr15:76221174-76221187
50	CTCF	chr15:76221100-76221250	SK-N-SH_RA	brain:	n/a	chr15:76221174-76221187

No.	Distal block	Cell Line	Cell type
1	chr15:76102027..76103101-chr15:76220766..76221842,9	MCF-7	breast:
2	chr15:76218432..76221221-chr15:76222501..76224322,2	K562	blood:
3	chr15:76220909..76222483-chr15:76431367..76432547,6	MCF-7	breast:

Variant related genes	Relation type
FBXO22	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv984193	chr15:76214943-76221739	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
4	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
5	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:76207000-76226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:76207000-76228200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:76207000-76228200	Weak transcription	Colonic Mucosa	Colon
9	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:76207200-76225000	Weak transcription	Spleen	Spleen
11	chr15:76207200-76226600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:76207400-76222200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:76207400-76222200	Weak transcription	Brain Angular Gyrus	brain
14	chr15:76207400-76223000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:76208000-76222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:76209000-76225000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:76209000-76225000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:76209800-76222800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:76210200-76222200	Strong transcription	Primary T cells from cord blood	blood
21	chr15:76210800-76225000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:76212200-76222600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:76212400-76223400	Strong transcription	HepG2	liver
25	chr15:76213000-76221800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:76213000-76222200	Weak transcription	Brain Anterior Caudate	brain
27	chr15:76213000-76224200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:76214000-76222400	Weak transcription	Placenta	Placenta
29	chr15:76214800-76222800	Weak transcription	Fetal Thymus	thymus
30	chr15:76215000-76226600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:76215200-76222200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:76215200-76222200	Weak transcription	Osteobl	bone
33	chr15:76215200-76222800	Weak transcription	NH-A	brain
34	chr15:76215200-76223200	Weak transcription	Ovary	ovary
35	chr15:76215200-76225000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:76215200-76225000	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:76215200-76225000	Weak transcription	Fetal Lung	lung
38	chr15:76215200-76225000	Weak transcription	NHDF-Ad	bronchial
39	chr15:76215200-76229200	Weak transcription	Esophagus	oesophagus
40	chr15:76215400-76222200	Weak transcription	Adipose Nuclei	Adipose
41	chr15:76215400-76222200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:76215400-76222200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:76215400-76227000	Weak transcription	Small Intestine	intestine
44	chr15:76215600-76221200	Weak transcription	HUVEC	blood vessel
45	chr15:76215600-76224200	Weak transcription	Fetal Intestine Small	intestine
46	chr15:76215800-76222200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:76216400-76222200	Weak transcription	Dnd41	blood
48	chr15:76216800-76222200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:76217000-76222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:76217000-76222400	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links