Variant report

Variant rs542811209
Chromosome Location chr5:115864689-115864690
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115828200-115865400 Weak transcription Primary T cells from cord blood blood
2 chr5:115845800-115867200 Weak transcription Right Ventricle heart
3 chr5:115857400-115865400 Weak transcription Ovary ovary
4 chr5:115858200-115867000 Enhancers HUES64 Cell Line embryonic stem cell
5 chr5:115858400-115873600 Enhancers iPS-15b Cell Line embryonic stem cell
6 chr5:115859400-115870000 Weak transcription Fetal Muscle Trunk muscle
7 chr5:115860000-115865400 Enhancers HUES6 Cell Line embryonic stem cell
8 chr5:115860000-115869600 Enhancers iPS-20b Cell Line embryonic stem cell
9 chr5:115860000-115872000 Enhancers HUES48 Cell Line embryonic stem cell
10 chr5:115860000-115872200 Enhancers HepG2 liver
11 chr5:115860200-115867000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr5:115860600-115865600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
13 chr5:115861000-115870400 Enhancers iPS-18 Cell Line embryonic stem cell
14 chr5:115861200-115865600 Enhancers ES-I3 Cell Line embryonic stem cell
15 chr5:115861600-115867000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr5:115862000-115864800 Enhancers Liver Liver
17 chr5:115863000-115864800 Enhancers Fetal Brain Female brain
18 chr5:115863200-115865800 Enhancers Fetal Lung lung
19 chr5:115863400-115865200 Enhancers Fetal Heart heart
20 chr5:115863400-115865600 Enhancers Fetal Stomach stomach
21 chr5:115863400-115865800 Enhancers H1 Cell Line embryonic stem cell
22 chr5:115863600-115867000 Enhancers Cortex derived primary cultured neurospheres brain
23 chr5:115863800-115865200 Enhancers ES-WA7 Cell Line embryonic stem cell
24 chr5:115863800-115865600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
25 chr5:115864000-115864800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr5:115864000-115864800 Flanking Active TSS Brain Cingulate Gyrus brain
27 chr5:115864000-115864800 Enhancers Placenta Placenta
28 chr5:115864000-115864800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
29 chr5:115864000-115865000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr5:115864000-115865000 Enhancers H9 Cell Line embryonic stem cell
31 chr5:115864000-115865200 Flanking Active TSS Stomach Smooth Muscle stomach
32 chr5:115864000-115865600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr5:115864000-115865800 Enhancers Small Intestine intestine
34 chr5:115864000-115866000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
35 chr5:115864000-115866000 Enhancers Fetal Muscle Leg muscle
36 chr5:115864000-115866200 Enhancers Fetal Kidney kidney
37 chr5:115864000-115867200 Enhancers Fetal Adrenal Gland Adrenal Gland
38 chr5:115864200-115864800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
39 chr5:115864200-115864800 Flanking Active TSS Brain Anterior Caudate brain
40 chr5:115864200-115864800 Flanking Active TSS Brain Germinal Matrix brain
41 chr5:115864200-115864800 Active TSS Brain Inferior Temporal Lobe brain
42 chr5:115864200-115864800 Flanking Active TSS Duodenum Mucosa Duodenum
43 chr5:115864200-115865200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr5:115864400-115864800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr5:115864400-115864800 Flanking Active TSS Brain Angular Gyrus brain
46 chr5:115864400-115864800 Active TSS Brain Hippocampus Middle brain
47 chr5:115864400-115864800 Active TSS Brain Substantia Nigra brain
48 chr5:115864400-115865200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr5:115864400-115865600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr5:115864400-115867000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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