Variant report

Variant	rs542822667
Chromosome Location	chr5:107716360-107716361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:107700578..107705838-chr5:107715421..107718628,5	K562	blood:
2	chr5:107703017..107709518-chr5:107714821..107720551,7	MCF-7	breast:
3	chr5:107716332..107718020-chr5:108743767..108745562,2	MCF-7	breast:
4	chr5:104726534..104729492-chr5:107716153..107718681,2	K562	blood:
5	chr5:102896315..102898883-chr5:107715677..107718329,2	K562	blood:
6	chr5:107703047..107709148-chr5:107715421..107721287,10	K562	blood:
7	chr5:107715063..107717038-chr5:110074735..110077588,2	K562	blood:
8	chr5:107699675..107702509-chr5:107715943..107717724,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198961	Chromatin interaction
ENSG00000112874	Chromatin interaction
ENSG00000145743	Chromatin interaction
ENSG00000251574	Chromatin interaction
ENSG00000164209	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3338064	chr5:107716078-107718926	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107714200-107716800	Active TSS	Right Atrium	heart
2	chr5:107714200-107718200	Active TSS	Fetal Brain Female	brain
3	chr5:107714200-107718600	Active TSS	GM12878-XiMat	blood
4	chr5:107714400-107718400	Active TSS	Brain Cingulate Gyrus	brain
5	chr5:107714400-107718600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107714800-107716400	Active TSS	Fetal Heart	heart
7	chr5:107715000-107716400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:107715000-107716400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:107715000-107716600	Flanking Active TSS	Dnd41	blood
10	chr5:107715000-107717000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:107715000-107718800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:107715000-107719000	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr5:107715000-107719000	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr5:107715200-107716400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr5:107715200-107718200	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr5:107715200-107718400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr5:107715200-107718600	Active TSS	NHLF	lung
18	chr5:107715400-107716400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:107715400-107718400	Active TSS	Fetal Stomach	stomach
20	chr5:107715400-107718600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:107715400-107718600	Active TSS	Aorta	Aorta
22	chr5:107715400-107719000	Active TSS	Psoas Muscle	Psoas
23	chr5:107715400-107719200	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr5:107715600-107716400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr5:107715600-107716400	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr5:107715600-107716400	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr5:107715600-107716400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:107715600-107716400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr5:107715600-107716400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr5:107715600-107716600	Flanking Active TSS	Fetal Thymus	thymus
31	chr5:107715600-107718200	Active TSS	K562	blood
32	chr5:107715600-107718400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:107715600-107718400	Active TSS	Brain Germinal Matrix	brain
34	chr5:107715600-107718400	Active TSS	HSMMtube	muscle
35	chr5:107715600-107718600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:107715600-107718600	Active TSS	Right Ventricle	heart
37	chr5:107715600-107718600	Active TSS	Stomach Smooth Muscle	stomach
38	chr5:107715600-107718600	Active TSS	Thymus	Thymus
39	chr5:107715600-107718800	Active TSS	Pancreas	Pancrea
40	chr5:107715600-107719000	Active TSS	Colonic Mucosa	Colon
41	chr5:107715600-107719000	Active TSS	Fetal Intestine Large	intestine
42	chr5:107715600-107719000	Active TSS	Fetal Intestine Small	intestine
43	chr5:107715600-107719000	Active TSS	Fetal Muscle Trunk	muscle
44	chr5:107715800-107716400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr5:107715800-107716400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr5:107715800-107716600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr5:107715800-107716600	Active TSS	Fetal Kidney	kidney
48	chr5:107715800-107716600	Active TSS	Fetal Lung	lung
49	chr5:107715800-107718200	Active TSS	Muscle Satellite Cultured Cells	--
50	chr5:107715800-107718400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links