The 2.0 version of rSNPBase

Variant report

Variant rs542825619
Chromosome Location chr4:99572016-99572017
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:99548000-99577000 Weak transcription Esophagus oesophagus
2 chr4:99564400-99575600 Weak transcription Fetal Kidney kidney
3 chr4:99566000-99575200 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr4:99567600-99574200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr4:99567600-99574400 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr4:99567600-99574800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr4:99568400-99575000 Weak transcription Thymus Thymus
8 chr4:99569600-99578200 Weak transcription Aorta Aorta
9 chr4:99569600-99578400 Weak transcription Spleen Spleen
10 chr4:99570000-99576800 Weak transcription Fetal Stomach stomach
11 chr4:99570200-99573800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr4:99570200-99573800 Weak transcription Fetal Brain Male brain
13 chr4:99570200-99577000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr4:99570200-99577000 Weak transcription Fetal Heart heart
15 chr4:99570400-99573800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr4:99570600-99572200 Weak transcription Muscle Satellite Cultured Cells --
17 chr4:99570600-99573800 Weak transcription Brain Hippocampus Middle brain
18 chr4:99571000-99573600 Weak transcription NH-A brain
19 chr4:99571000-99574200 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr4:99571200-99572200 ZNF genes & repeats A549 lung
21 chr4:99571200-99572800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr4:99571200-99573600 Weak transcription Brain Anterior Caudate brain
23 chr4:99571200-99574000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr4:99571200-99574000 Weak transcription Brain Substantia Nigra brain
25 chr4:99571200-99574400 Weak transcription Ovary ovary
26 chr4:99571400-99572400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr4:99571400-99572600 ZNF genes & repeats Primary hematopoietic stem cells blood
28 chr4:99571400-99572600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
29 chr4:99571400-99573000 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
30 chr4:99571400-99573400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
31 chr4:99571600-99572400 Weak transcription Brain Cingulate Gyrus brain
32 chr4:99571600-99573400 Weak transcription NHLF lung
33 chr4:99571600-99573600 Weak transcription Osteobl bone
34 chr4:99571600-99574000 Weak transcription Fetal Brain Female brain
35 chr4:99571600-99574600 Weak transcription Brain Inferior Temporal Lobe brain
36 chr4:99571800-99572600 ZNF genes & repeats HMEC breast
37 chr4:99571800-99574000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr4:99571800-99574000 Weak transcription Brain Angular Gyrus brain
39 chr4:99572000-99573200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr4:99572000-99573600 Weak transcription HUVEC blood vessel
41 chr4:99572000-99573800 Weak transcription HSMM muscle

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Last update: Aug 31, 2015