Variant report

Variant	rs542827139
Chromosome Location	chr10:116570934-116570935
allele	lengthTooLong
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2089478	chr10:116570741-116571200	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
2	chr10:116567600-116571800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr10:116568000-116572200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116568600-116571600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:116568600-116571800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr10:116568800-116571600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:116569000-116572200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:116569800-116580600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:116570400-116571000	Flanking Active TSS	GM12878-XiMat	blood
10	chr10:116570400-116571200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:116570400-116571600	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:116570400-116571800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr10:116570400-116572000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:116570400-116572000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:116570600-116571000	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:116570600-116571000	Enhancers	Primary hematopoietic stem cells	blood
17	chr10:116570600-116571600	Enhancers	Dnd41	blood
18	chr10:116570600-116572600	Enhancers	Fetal Thymus	thymus
19	chr10:116570600-116574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:116570600-116575600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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