Variant report

Variant	rs542828383
Chromosome Location	chr13:39963780-39963781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900008	chr13:39962791-40020267	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39958800-39963800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:39959400-39965800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39959600-39968800	Weak transcription	Adipose Nuclei	Adipose
4	chr13:39960000-39979200	Weak transcription	NHDF-Ad	bronchial
5	chr13:39960600-39968800	Weak transcription	Brain Anterior Caudate	brain
6	chr13:39960600-39969000	Weak transcription	Brain Germinal Matrix	brain
7	chr13:39960800-39968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:39960800-39969000	Weak transcription	Osteobl	bone
9	chr13:39962200-39968800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:39962800-39963800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:39963000-39963800	Enhancers	Left Ventricle	heart
12	chr13:39963000-39963800	Enhancers	Right Atrium	heart
13	chr13:39963200-39963800	Enhancers	Aorta	Aorta
14	chr13:39963200-39967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:39963400-39963800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:39963400-39964000	Enhancers	Ovary	ovary
17	chr13:39963600-39963800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr13:39963600-39963800	Enhancers	Right Ventricle	heart
19	chr13:39963600-39964000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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