Variant report

Variant	rs542852522
Chromosome Location	chr9:97387009-97387010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97334835..97337709-chr9:97386591..97389004,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3321732	chr9:97386934-97387407	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3399346	chr9:97386944-97387405	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97374600-97392600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:97374600-97393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:97381400-97389800	Weak transcription	Pancreas	Pancrea
5	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
7	chr9:97382600-97392800	Weak transcription	Lung	lung
8	chr9:97382600-97393000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:97382800-97387600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:97382800-97388200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:97382800-97399400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:97383800-97390200	Strong transcription	Fetal Intestine Small	intestine
13	chr9:97384400-97387200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:97384800-97387600	Weak transcription	Gastric	stomach
15	chr9:97385000-97388200	Weak transcription	Fetal Thymus	thymus
16	chr9:97385200-97387200	Weak transcription	Fetal Stomach	stomach
17	chr9:97385800-97392800	Weak transcription	Fetal Lung	lung
18	chr9:97386000-97389800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:97386200-97387200	Weak transcription	Stomach Mucosa	stomach
20	chr9:97386200-97387200	Weak transcription	HepG2	liver
21	chr9:97386400-97387200	Weak transcription	Liver	Liver
22	chr9:97387000-97387400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:97387000-97387600	Enhancers	HUVEC	blood vessel
24	chr9:97387000-97388200	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links