Variant report

Variant	rs542870163
Chromosome Location	chr10:5595673-5595674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5496908..5513504-chr10:5583876..5597686,82	MCF-7	breast:
2	chr10:5594983..5597164-chr10:5655086..5657673,2	MCF-7	breast:
3	chr10:5595300..5599425-chr10:5700368..5703903,3	MCF-7	breast:
4	chr10:5593662..5595801-chr10:5669870..5671896,3	MCF-7	breast:
5	chr10:5581645..5583393-chr10:5595505..5597370,2	K562	blood:
6	chr10:5594998..5598470-chr10:5658826..5662081,3	MCF-7	breast:
7	chr10:5583637..5601494-chr10:5650599..5672411,88	MCF-7	breast:
8	chr10:5593662..5596441-chr10:5715811..5718225,2	MCF-7	breast:
9	chr10:5584975..5598212-chr10:5621607..5634806,86	MCF-7	breast:
10	chr10:5588926..5596967-chr10:5614767..5621599,13	MCF-7	breast:
11	chr10:5594566..5598758-chr10:5599072..5603541,5	K562	blood:
12	chr10:5593038..5596682-chr10:5605799..5608006,4	MCF-7	breast:
13	chr10:5592831..5595725-chr10:5854017..5855784,2	MCF-7	breast:
14	chr10:5485039..5496687-chr10:5584772..5598184,85	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000228951	Chromatin interaction
ENSG00000228685	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000231483	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv549886	chr10:5205437-5632060	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv831774	chr10:5463556-5657421	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv894798	chr10:5503610-5670275	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1051283	chr10:5505474-5619941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1049523	chr10:5542109-5619941	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv523491	chr10:5542109-5720067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
10	nsv1052002	chr10:5544571-5619941	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv1038479	chr10:5545773-5619941	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv2757364	chr10:5557024-5720512	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv894800	chr10:5572893-5621628	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv470915	chr10:5591025-5602880	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv1044746	chr10:5595343-5619941	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5586200-5596600	Enhancers	Placenta	Placenta
2	chr10:5586200-5597000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:5586400-5597800	Enhancers	Esophagus	oesophagus
4	chr10:5587000-5597600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:5587600-5596800	Enhancers	Fetal Thymus	thymus
6	chr10:5588400-5608200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:5589400-5597000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:5590200-5596800	Enhancers	HMEC	breast
9	chr10:5590200-5597200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:5590200-5599400	Enhancers	Fetal Intestine Small	intestine
11	chr10:5590200-5599800	Enhancers	Fetal Intestine Large	intestine
12	chr10:5590400-5596200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:5590400-5597000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:5590600-5596200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:5590600-5596200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:5590600-5596400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:5590800-5596000	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:5590800-5597400	Enhancers	Stomach Mucosa	stomach
19	chr10:5590800-5598400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:5591000-5596000	Weak transcription	Adipose Nuclei	Adipose
21	chr10:5591000-5596000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:5591000-5596200	Weak transcription	Psoas Muscle	Psoas
23	chr10:5591000-5596400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:5591000-5598600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:5591200-5595800	Weak transcription	Liver	Liver
26	chr10:5591200-5596200	Weak transcription	Fetal Brain Male	brain
27	chr10:5591400-5596000	Weak transcription	Pancreas	Pancrea
28	chr10:5591400-5596200	Enhancers	HepG2	liver
29	chr10:5591400-5597200	Enhancers	K562	blood
30	chr10:5591400-5605400	Weak transcription	Right Atrium	heart
31	chr10:5591800-5596000	Weak transcription	NHLF	lung
32	chr10:5591800-5596200	Weak transcription	NHDF-Ad	bronchial
33	chr10:5592400-5596400	Enhancers	Colonic Mucosa	Colon
34	chr10:5592800-5595800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr10:5592800-5596600	Enhancers	HSMM	muscle
36	chr10:5592800-5596600	Enhancers	NH-A	brain
37	chr10:5593000-5595800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr10:5593000-5596400	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:5593000-5596800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr10:5593400-5601600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:5593600-5601000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:5594000-5598600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:5594200-5595800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
44	chr10:5594200-5596000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:5594200-5596000	Weak transcription	A549	lung
46	chr10:5594200-5596200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:5594400-5596000	Weak transcription	Fetal Kidney	kidney
48	chr10:5594400-5596200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:5594400-5596600	Enhancers	NHEK	skin
50	chr10:5594400-5596800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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