Variant report

Variant	rs542925442
Chromosome Location	chr15:83057106-83057107
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr15:83056870-83057257	K562	blood:	n/a	chr15:83057037-83057044

Variant related genes	Relation type
UBE2Q2P3	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv428802	chr15:82879650-83107710	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv977745	chr15:82912356-83068886	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv833069	chr15:82936700-83159994	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv21199	chr15:82937569-83057978	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv904447	chr15:82952273-83099227	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv904448	chr15:82952273-83146206	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
15	esv3501526	chr15:82953997-83163195	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv3501527	chr15:82953997-83163195	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv3511106	chr15:82954147-83150695	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
18	esv3511107	chr15:82954147-83150695	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
19	esv3312434	chr15:82954397-83162595	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
20	esv3312435	chr15:82954397-83162595	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
21	esv1823691	chr15:82957249-83126316	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
22	esv3485636	chr15:82957847-83162945	Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
23	esv3485637	chr15:82957847-83162945	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv482552	chr15:82970501-83140071	Active TSS	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
25	esv3521494	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
26	esv3521495	chr15:83038997-83162795	Inactive region	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
27	esv13428	chr15:83040205-83060523	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
28	nsv570255	chr15:83042189-83068754	Inactive region	TF binding region	2 gene(s)	inside rSNPs	diseases
29	esv1850985	chr15:83056155-83091723	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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