The 2.0 version of rSNPBase
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Variant report
Variant
rs542931611
Chromosome Location
chr2:209379838-209379839
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:2)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CBX3
chr2:209379802-209380235
K562
blood:
n/a
n/a
2
TRIM28
chr2:209379789-209380195
K562
blood:
n/a
n/a
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr2:209378473..209380625-chr2:209381842..209384609,2
K562
blood:
2
chr2:209373259..209376239-chr2:209378226..209380019,3
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000232409
TF binding region
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv961004
chr2:209375664-209393273
Enhancers Weak transcription
TF binding regionChromatin interactive regionlncRNA
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links