Variant report

Variant	rs542940480
Chromosome Location	chr7:147355448-147355449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv527018	chr7:147337742-147360817	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3476933	chr7:147354937-147355472	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147349000-147355600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:147349000-147355600	Weak transcription	Fetal Lung	lung
3	chr7:147350800-147355600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:147351200-147355600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:147351800-147355600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:147351800-147355600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:147351800-147355600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:147355400-147356200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:147355400-147357200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:147355400-147357400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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