Variant report

Variant	rs542966491
Chromosome Location	chr6:109805264-109805265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr6:109804297-109805329	K562	blood:	n/a	chr6:109805018-109805031 chr6:109804343-109804357
2	MXI1	chr6:109803674-109805276	IMR90	lung:	n/a	chr6:109804471-109804480 chr6:109804473-109804482 chr6:109804473-109804482
3	MXI1	chr6:109803160-109805900	SK-N-SH	brain:	n/a	chr6:109804471-109804480 chr6:109804473-109804482 chr6:109804473-109804482
4	MAZ	chr6:109803443-109805739	IMR90	lung:	n/a	chr6:109804472-109804481 chr6:109804472-109804482 chr6:109804471-109804482 chr6:109805428-109805437 chr6:109804467-109804486 chr6:109804471-109804481 chr6:109804471-109804481 chr6:109804471-109804480 chr6:109804472-109804481 chr6:109804472-109804481 chr6:109804468-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804471-109804482 chr6:109804470-109804483 chr6:109804472-109804482 chr6:109804470-109804483

No.	Distal block	Cell Line	Cell type
1	chr6:109760146..109763576-chr6:109804047..109805770,3	MCF-7	breast:
2	chr6:109804505..109806373-chr6:109808766..109811459,2	K562	blood:
3	chr6:109702597..109705942-chr6:109803330..109806291,3	K562	blood:
4	chr6:31782365..31783340-chr6:109804610..109805551,2	Hela-S3	cervix:
5	chr6:109759652..109764361-chr6:109800705..109806354,8	K562	blood:
6	chr6:109703226..109705290-chr6:109802868..109805423,2	K562	blood:
7	chr6:109700978..109703685-chr6:109804896..109807033,2	MCF-7	breast:
8	chr6:109759628..109764398-chr6:109803414..109806709,4	K562	blood:
9	chr6:109804488..109806145-chr6:109811754..109813384,2	K562	blood:
10	chr6:109760182..109762059-chr6:109802883..109805670,2	MCF-7	breast:

Variant related genes	Relation type
ZBTB24	TF binding region
ENSG00000223537	TF binding region
ENSG00000260273	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000223537	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000204389	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377564	chr6:109803284-109806132	Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
2	esv3324958	chr6:109803709-109805707	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109803200-109805400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:109803400-109805400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:109803400-109805400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:109803400-109805400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:109803400-109805400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:109803400-109805400	Active TSS	GM12878-XiMat	blood
7	chr6:109803400-109805400	Active TSS	NHEK	skin
8	chr6:109803400-109805400	Active TSS	NHLF	lung
9	chr6:109803600-109805400	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr6:109803600-109805400	Active TSS	Ovary	ovary
11	chr6:109803600-109805400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:109803800-109805400	Active TSS	Muscle Satellite Cultured Cells	--
13	chr6:109804000-109805400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:109804000-109805400	Active TSS	Fetal Muscle Trunk	muscle
15	chr6:109804200-109805400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:109804400-109805400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:109804400-109814200	Weak transcription	Gastric	stomach
18	chr6:109804800-109805400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr6:109804800-109805400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:109804800-109805400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:109804800-109805400	Flanking Active TSS	Dnd41	blood
22	chr6:109804800-109805400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:109805000-109805400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
24	chr6:109805000-109805400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:109805000-109805400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:109805000-109805400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr6:109805000-109805400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
28	chr6:109805000-109805400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr6:109805000-109805400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:109805000-109805400	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr6:109805000-109805400	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr6:109805000-109805400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:109805000-109805400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr6:109805000-109805400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr6:109805000-109805400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:109805000-109805400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr6:109805000-109805400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:109805000-109805400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:109805000-109805400	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr6:109805000-109805400	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr6:109805000-109805400	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr6:109805000-109805400	Flanking Active TSS	Brain Substantia Nigra	brain
43	chr6:109805000-109805400	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr6:109805000-109805400	Flanking Active TSS	Fetal Brain Female	brain
45	chr6:109805000-109805400	Active TSS	Fetal Heart	heart
46	chr6:109805000-109805400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:109805000-109805400	Flanking Active TSS	A549	lung
48	chr6:109805000-109805400	Flanking Active TSS	Hela-S3	cervix
49	chr6:109805000-109805400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
50	chr6:109805000-109805400	Flanking Active TSS	K562	blood

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