Variant report

Variant	rs542985802
Chromosome Location	chr11:75060221-75060222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75056062..75061130-chr11:75109293..75114170,7	MCF-7	breast:
2	chr11:75041535..75043406-chr11:75058885..75060928,2	K562	blood:

Variant related genes	Relation type
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases
4	esv3374722	chr11:75060004-75064302	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75039400-75060800	Enhancers	Placenta	Placenta
2	chr11:75044200-75060400	Genic enhancers	Fetal Stomach	stomach
3	chr11:75046400-75061200	Enhancers	Fetal Thymus	thymus
4	chr11:75046800-75061600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:75047000-75061200	Enhancers	Left Ventricle	heart
6	chr11:75047000-75061200	Enhancers	Stomach Mucosa	stomach
7	chr11:75047200-75060400	Enhancers	Brain Angular Gyrus	brain
8	chr11:75047600-75060600	Enhancers	Right Atrium	heart
9	chr11:75047800-75060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:75047800-75060800	Genic enhancers	Fetal Intestine Small	intestine
11	chr11:75048000-75061600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr11:75048400-75061000	Enhancers	Liver	Liver
13	chr11:75051600-75060400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:75051800-75060600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr11:75052200-75061200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:75052200-75061400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr11:75052400-75061200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr11:75052400-75061200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:75052400-75061800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:75053400-75061600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:75054600-75062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:75055000-75060400	Enhancers	Dnd41	blood
23	chr11:75055400-75060400	Genic enhancers	Fetal Intestine Large	intestine
24	chr11:75055400-75061400	Enhancers	Right Ventricle	heart
25	chr11:75055600-75061800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:75056000-75060400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr11:75056000-75061600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:75056200-75062000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:75056400-75060400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:75056600-75060800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:75056600-75061800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:75056800-75060800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
33	chr11:75057000-75060600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:75057200-75060400	Enhancers	HUVEC	blood vessel
35	chr11:75057200-75060800	Enhancers	Fetal Muscle Leg	muscle
36	chr11:75057200-75062000	Enhancers	Fetal Heart	heart
37	chr11:75057400-75060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:75057400-75061200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:75057400-75061800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:75057400-75061800	Enhancers	NHDF-Ad	bronchial
41	chr11:75057600-75060400	Enhancers	Primary hematopoietic stem cells	blood
42	chr11:75057600-75062600	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr11:75057800-75060600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:75057800-75061200	Enhancers	Ovary	ovary
45	chr11:75057800-75061600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:75057800-75061600	Enhancers	NHLF	lung
47	chr11:75058000-75061200	Enhancers	HSMM	muscle
48	chr11:75058000-75061600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:75058200-75060400	Enhancers	Lung	lung
50	chr11:75058200-75060800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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