Variant report

Variant	rs542989513
Chromosome Location	chr1:78835559-78835560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv482697	chr1:78786028-78935333	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3320263	chr1:78833748-78835955	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv3320265	chr1:78833785-78835942	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
7	esv3320264	chr1:78833811-78835858	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv3320261	chr1:78833819-78835880	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	esv3320266	chr1:78833898-78835839	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
10	esv9802	chr1:78834094-78835855	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78832400-78837800	Weak transcription	Pancreas	Pancrea
2	chr1:78833600-78837600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:78833800-78836800	Enhancers	NHDF-Ad	bronchial
4	chr1:78833800-78837600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:78833800-78837600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:78834000-78836200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:78834600-78837600	Enhancers	HMEC	breast
8	chr1:78834600-78837800	Enhancers	HSMM	muscle
9	chr1:78834800-78837600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:78834800-78837800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:78835400-78835800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:78835400-78837000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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