Variant report

Variant	rs542996340
Chromosome Location	chr2:86897710-86897711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1011590	chr2:86824181-86906114	Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv829489	chr2:86896770-86899157	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86888800-86898200	Weak transcription	Ovary	ovary
2	chr2:86891800-86898600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:86892000-86901200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:86897400-86897800	Enhancers	Rectal Smooth Muscle	rectum
5	chr2:86897400-86899000	Enhancers	Colon Smooth Muscle	Colon
6	chr2:86897600-86897800	Enhancers	Lung	lung
7	chr2:86897600-86898600	Enhancers	Right Atrium	heart
8	chr2:86897600-86898600	Weak transcription	A549	lung
9	chr2:86897600-86898800	Enhancers	Right Ventricle	heart
10	chr2:86897600-86899000	Enhancers	Placenta	Placenta
11	chr2:86897600-86899000	Enhancers	Left Ventricle	heart
12	chr2:86897600-86899000	Enhancers	Pancreas	Pancrea
13	chr2:86897600-86899600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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