Variant report

Variant	rs543001936
Chromosome Location	chr12:26187630-26187631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26186658..26189002-chr12:26189615..26191269,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3424003	chr12:26187510-26190058	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26171000-26190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:26175000-26190600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:26175000-26191000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:26175200-26190800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:26175400-26190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:26180000-26188200	Enhancers	NHDF-Ad	bronchial
7	chr12:26180200-26188200	Enhancers	Brain Hippocampus Middle	brain
8	chr12:26180800-26188200	Enhancers	Brain Substantia Nigra	brain
9	chr12:26180800-26195000	Weak transcription	HSMM	muscle
10	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:26182200-26190600	Weak transcription	Gastric	stomach
12	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:26182600-26188200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:26182600-26189800	Weak transcription	Fetal Intestine Large	intestine
15	chr12:26183600-26187800	Weak transcription	Fetal Kidney	kidney
16	chr12:26183600-26188000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:26183600-26190600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:26184600-26188000	Enhancers	Osteobl	bone
19	chr12:26184800-26187800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:26185200-26188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:26185600-26188200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr12:26185600-26188200	Enhancers	Hela-S3	cervix
23	chr12:26186000-26188200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:26186000-26189000	Weak transcription	Fetal Intestine Small	intestine
25	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
26	chr12:26186200-26189400	Weak transcription	Adipose Nuclei	Adipose
27	chr12:26186200-26190000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:26186200-26190000	Weak transcription	Ovary	ovary
29	chr12:26186200-26193400	Weak transcription	Fetal Lung	lung
30	chr12:26186200-26195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:26186400-26191000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr12:26186400-26191000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr12:26187000-26187800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr12:26187000-26190600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr12:26187000-26190600	Weak transcription	Brain Angular Gyrus	brain
36	chr12:26187000-26190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:26187000-26193200	Weak transcription	Esophagus	oesophagus
38	chr12:26187200-26188000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr12:26187200-26189600	Weak transcription	Left Ventricle	heart
40	chr12:26187200-26190000	Weak transcription	Psoas Muscle	Psoas
41	chr12:26187200-26190600	Weak transcription	Pancreas	Pancrea
42	chr12:26187200-26190600	Weak transcription	Right Atrium	heart
43	chr12:26187200-26190800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr12:26187200-26190800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr12:26187200-26193200	Weak transcription	Lung	lung
46	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr12:26187400-26187800	Enhancers	HUVEC	blood vessel
50	chr12:26187400-26188000	Enhancers	Colon Smooth Muscle	Colon

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