Variant report

Variant	rs543021647
Chromosome Location	chr7:66404579-66404580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66403410..66405393-chr7:66457555..66459835,2	K562	blood:
2	chr7:66403915..66405990-chr7:66414278..66417036,2	K562	blood:
3	chr7:66404078..66407158-chr7:66408723..66411794,4	K562	blood:
4	chr7:66395155..66398077-chr7:66403876..66405793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126524	Chromatin interaction
ENSG00000106609	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv436556	chr7:66403338-66410081	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387600-66407200	Weak transcription	NH-A	brain
2	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
3	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:66388200-66406800	Weak transcription	NHLF	lung
5	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
8	chr7:66389000-66406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:66389400-66405400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:66391200-66409800	Weak transcription	Brain Germinal Matrix	brain
11	chr7:66393000-66406600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:66393400-66411800	Weak transcription	Stomach Mucosa	stomach
13	chr7:66393800-66422200	Weak transcription	Fetal Heart	heart
14	chr7:66394200-66405400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:66394200-66408000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:66394400-66405400	Weak transcription	HMEC	breast
17	chr7:66394400-66405600	Weak transcription	Colonic Mucosa	Colon
18	chr7:66395400-66406800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:66395400-66406800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:66395600-66404600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:66395600-66405400	Weak transcription	Right Atrium	heart
22	chr7:66395600-66407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:66395800-66405400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:66395800-66406400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:66395800-66406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:66395800-66406800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:66395800-66406800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:66395800-66408000	Weak transcription	Esophagus	oesophagus
29	chr7:66395800-66412800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:66396000-66405400	Weak transcription	Spleen	Spleen
31	chr7:66396000-66406600	Weak transcription	Liver	Liver
32	chr7:66396000-66406600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:66396000-66406800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:66396000-66408200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:66396000-66409800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:66396000-66415800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:66396400-66406800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:66396800-66408000	Weak transcription	Small Intestine	intestine
39	chr7:66398400-66406400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:66398400-66406600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr7:66398400-66406800	Weak transcription	Placenta	Placenta
42	chr7:66398400-66406800	Weak transcription	Left Ventricle	heart
43	chr7:66398400-66410000	Weak transcription	Right Ventricle	heart
44	chr7:66398800-66405400	Weak transcription	Brain Anterior Caudate	brain
45	chr7:66398800-66405400	Weak transcription	Ovary	ovary
46	chr7:66398800-66405400	Weak transcription	Pancreas	Pancrea
47	chr7:66398800-66405400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:66398800-66406800	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:66398800-66406800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:66398800-66407800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links