Variant report

Variant	rs543029852
Chromosome Location	chr1:158520398-158520399
allele	-/GTTAAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:158520227-158520427	HepG2	liver:	n/a	chr1:158520329-158520345 chr1:158520330-158520341 chr1:158520328-158520342 chr1:158520329-158520340 chr1:158520329-158520340
2	MAFF	chr1:158520260-158520451	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
OR6Y1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470743	chr1:158484285-158521392	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv547983	chr1:158495464-158523671	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437248	chr1:158511445-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv437249	chr1:158513048-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv437250	chr1:158513048-158524436	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2764188	chr1:158513048-158527524	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv998666	chr1:158514881-158525623	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1005658	chr1:158514881-158526572	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3452526	chr1:158516603-158521879	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3452527	chr1:158516618-158521888	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3452528	chr1:158516668-158521840	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3452529	chr1:158516668-158521840	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv2422163	chr1:158516836-158521392	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3692924	chr1:158516836-158523671	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1013656	chr1:158516984-158542929	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1015106	chr1:158516984-158545423	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv1833445	chr1:158516996-158520417	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	nsv442095	chr1:158516996-158520417	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	nsv515774	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	nsv464117	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	nsv464128	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv547984	chr1:158517353-158521392	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
23	nsv464139	chr1:158520205-158521034	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
24	nsv547985	chr1:158520205-158521034	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
25	nsv547986	chr1:158520205-158556839	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links