Variant report

Variant	rs543041618
Chromosome Location	chr4:174278415-174278416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174266320..174268123-chr4:174277725..174279289,2	K562	blood:
2	chr4:174253186..174258199-chr4:174276395..174281769,8	MCF-7	breast:
3	chr4:174276338..174279776-chr4:174291363..174293028,3	K562	blood:
4	chr4:174248778..174262653-chr4:174278408..174298501,82	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SAP30-1	chr4:174278214-174278723	XLOC_003780
2	lnc-SAP30-1	chr4:174278082-174279252	NONHSAT099237

No data

No data

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction
ENSG00000272870	Chromatin interaction
ENSG00000164105	Chromatin interaction
ENSG00000248774	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967706	chr4:174277879-174279663	Weak transcription Enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
3	chr4:174277600-174289200	Weak transcription	Fetal Brain Female	brain
4	chr4:174278200-174279000	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links